CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BURCM (Chaperone protein htpG OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P L I I  DK   +++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:   21 HSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPNLRIRIGFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLS 109          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_YERPS (Chaperone protein htpG OS=Yersinia pseudotuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:   24 HSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_YERPP (Chaperone protein htpG OS=Yersinia pestis (strain Pestoides F) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:   24 HSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_YERPN (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:   24 HSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_YERPE (Chaperone protein htpG OS=Yersinia pestis GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:   22 HSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_YERPA (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L++ D+GIGMT+ ++++NLGTIA+SGTK F+E++ +
Sbjct:   24 HSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RALME (Chaperone protein htpG OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN+SDA DK+RFE++ + + L+   +L I I  D    +L I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:   23 HSLYSNKEIFLRELVSNASDATDKLRFEAIANPALLENDADLAIRIEADPAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_NITOC (Chaperone protein htpG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            +  YSNKEIFLRELISN +DA DK+RFE+LTD +  +    L I +  DK   +L+I D+GIGM + ++V N+GTIA+SGT+ F+E+L+
Sbjct:   25 HALYSNKEIFLRELISNGADAADKLRFEALTDDALYEDDSALHIRLSYDKDKRTLTIADNGIGMGRQEVVENIGTIAKSGTRAFLESLS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_ENT38 (Chaperone protein htpG OS=Enterobacter sp. (strain 638) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK N +L+I D+GIGM + +++++LGTIA+SGTK F+E++ +
Sbjct:   22 HSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDNRTLTIADNGIGMNRDEVIDHLGTIAKSGTKSFLESMGS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA DK+RFE L      +  PEL I I  DK   +++I D+GIGM++ ++V+++GTIA+SGTK F E L+
Sbjct:   23 HSLYSNKEIFLRELISNASDAADKLRFEGLAKPELFENDPELKIRIAFDKDARTITIADNGIGMSRDEVVSHIGTIAKSGTKSFFEQLS 111          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_BURCM5.884e-2055.06Chaperone protein htpG OS=Burkholderia ambifaria (... [more]
HTPG_YERPS7.685e-2050.00Chaperone protein htpG OS=Yersinia pseudotuberculo... [more]
HTPG_YERPP7.685e-2050.00Chaperone protein htpG OS=Yersinia pestis (strain ... [more]
HTPG_YERPN7.685e-2050.00Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]
HTPG_YERPE7.685e-2050.00Chaperone protein htpG OS=Yersinia pestis GN=htpG ... [more]
HTPG_YERPA7.685e-2050.00Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]
HTPG_RALME7.685e-2052.81Chaperone protein htpG OS=Ralstonia metallidurans ... [more]
HTPG_NITOC7.685e-2052.81Chaperone protein htpG OS=Nitrosococcus oceani (st... [more]
HTPG_ENT387.685e-2050.00Chaperone protein htpG OS=Enterobacter sp. (strain... [more]
HTPG_CHRVO7.685e-2053.93Chaperone protein htpG OS=Chromobacterium violaceu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
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