CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_VIBC3 (Chaperone protein htpG OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA+DK+RF++L+         EL + +  DK  N+L+I D+GIGMT+ +++ NLGTIA+SGT EF   L+
Sbjct:   27 HSLYSNKEIFLRELISNASDAVDKLRFQALSHPDLYQGDAELGVKLSFDKDKNTLTISDNGIGMTRDEVIENLGTIAKSGTAEFFSKLS 115          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SHISS (Chaperone protein htpG OS=Shigella sonnei (strain Ss046) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:   22 HSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SHIFL (Chaperone protein htpG OS=Shigella flexneri GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:   22 HSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SHIBS (Chaperone protein htpG OS=Shigella boydii serotype 4 (strain Sb227) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:   22 HSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RHOPA (Chaperone protein htpG OS=Rhodopseudomonas palustris GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 697
            ++ YS  +IFLRELISN+SDALDK+R+ES+     ++   E  I IIP K  ++L+I+D+GIGM + +L++NLGTIA+SGTK F+  LA   D
Sbjct:   26 HSVYSETDIFLRELISNASDALDKLRYESIAKPELMEKGGEPKIRIIPKKAPDTLTIVDNGIGMDRQELIDNLGTIAKSGTKSFISKLAETKD 118          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RHOP5 (Chaperone protein htpG OS=Rhodopseudomonas palustris (strain BisA53) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 48/95 (50.53%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 703
            ++ YS  EIFLRELISN SDALDK+R+E+++    ++A     I I+P K  ++LS+ID+GIGM + +L++NLGTIA+SGTK F+  L    D S
Sbjct:   26 HSVYSETEIFLRELISNGSDALDKLRYEAISKPDLMEAGGTPKIQIVPKKAPDTLSVIDNGIGMDRQELIDNLGTIAKSGTKSFLTKLTEAKDGS 120          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_MARMS (Chaperone protein htpG OS=Marinomonas sp. (strain MWYL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA+DK+RFES+ +   L   P L + I  DK  N++ I D+G+GM++ + + NLGTIA+SGT  F+E L+
Sbjct:   25 HSLYSNKEIFLRELISNASDAVDKLRFESVANADLLAEDPNLRVRIEFDKDTNTVVIDDNGVGMSREEAITNLGTIAKSGTSAFLEQLS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_KLEP7 (Chaperone protein htpG OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 45/90 (50.00%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L+     +   EL + +  DK N +L+I D+GIGM + +++++LGTIA+SGTK F+E++ +
Sbjct:   22 HSLYSNKEIFLRELISNASDAADKLRFRALSQPDLYEGDGELRVRVSFDKDNRTLTIADNGIGMNREEVIDHLGTIAKSGTKAFLESMGS 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_EHRCJ (Chaperone protein htpG OS=Ehrlichia canis (strain Jake) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 46/88 (52.27%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ Y+NK+IFLRELISN+SDA DK+R+ESL+++  +D   +  I I  D+  N L I D+GIGM + DL++NLGTIA SGT+ F++A+
Sbjct:   25 HSLYTNKDIFLRELISNASDACDKLRYESLSNQDLIDGDTDFKIVISVDQDKNRLYISDNGIGMNRQDLIDNLGTIAHSGTQRFLDAI 112          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_ECOUT (Chaperone protein htpG OS=Escherichia coli (strain UTI89 / UPEC) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   +L+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:   22 HSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_VIBC31.004e-1952.81Chaperone protein htpG OS=Vibrio cholerae serotype... [more]
HTPG_SHISS1.004e-1950.00Chaperone protein htpG OS=Shigella sonnei (strain ... [more]
HTPG_SHIFL1.004e-1950.00Chaperone protein htpG OS=Shigella flexneri GN=htp... [more]
HTPG_SHIBS1.004e-1950.00Chaperone protein htpG OS=Shigella boydii serotype... [more]
HTPG_RHOPA1.004e-1951.61Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_RHOP51.004e-1950.53Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_MARMS1.004e-1952.81Chaperone protein htpG OS=Marinomonas sp. (strain ... [more]
HTPG_KLEP71.004e-1950.00Chaperone protein htpG OS=Klebsiella pneumoniae su... [more]
HTPG_EHRCJ1.004e-1952.27Chaperone protein htpG OS=Ehrlichia canis (strain ... [more]
HTPG_ECOUT1.004e-1950.00Chaperone protein htpG OS=Escherichia coli (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
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