CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_NEOSM (Chaperone protein htpG OS=Neorickettsia sennetsu (strain Miyayama) GN=htpG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ Y +K++FLRELISN+SDAL+K+R  S  D+  L+  PEL I I  +K    L I D+GIGM + +LV NLGT+ARSGT++F+E+L
Sbjct:   25 HSLYRHKDVFLRELISNASDALNKLREASYFDQELLEDNPELEILISLNKEKKILEISDNGIGMDEKELVENLGTVARSGTEKFLESL 112          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_METS4 (Chaperone protein htpG OS=Methylobacterium sp. (strain 4-46) GN=htpG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            +  YS +EIFLREL++N++DA+D+ RF +LTD + L    +  + I PDK   +L+I D GIGM+K DL  NLGTIARSGT+ F ++LA
Sbjct:   23 HALYSEREIFLRELVANAADAVDRRRFGALTDPA-LSLPADAKVRIRPDKAARTLAISDPGIGMSKEDLAQNLGTIARSGTRAFSQSLA 110          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SHESH (Chaperone protein htpG OS=Shewanella sediminis (strain HAW-EB3) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 42/89 (47.19%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN++DA DK+R+E+LT+ +  +   EL + I  +K   +++I D+GIGMT+  ++ +LGTIA+SGT +F + L+
Sbjct:   22 HSLYSNKEIFLRELVSNAADASDKLRYEALTNDALYEGDGELRVRISTNKEKGTVTIEDNGIGMTRDTVIEHLGTIAKSGTADFFKNLS 110          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SHELP (Chaperone protein htpG OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN++DA DK+R+E+LT     +   EL + +  D    +++I D+GIGMT+  ++ +LGTIA+SGT EF + L+
Sbjct:   22 HSLYSNKEIFLRELVSNAADAADKLRYEALTKDELYEGDGELRVRVSADSEKGTVTIEDNGIGMTRDGVIEHLGTIAKSGTAEFFKNLS 110          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RICCK (Chaperone protein htpG OS=Rickettsia canadensis (strain McKiel) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIF+RELISN+SDA DK+R+ S ++ + +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L+
Sbjct:   21 HSLYSNKEIFMRELISNASDACDKLRYLSQSNNTLVAGDSNFKITVKIDKNNGQIIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLS 109          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_PSEMY (Chaperone protein htpG OS=Pseudomonas mendocina (strain ymp) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 44/89 (49.44%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA DK+RFE+L     L+   EL I +  DK   ++++ D+GIGM++ +++ +LGTIA+SGT +F++ L+
Sbjct:   25 HSLYSNKEIFLRELISNASDAADKLRFEALAKPELLEGGAELKIRLSFDKDAKTVTLEDNGIGMSRDEVIAHLGTIAKSGTADFLKNLS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_CHLPD (Chaperone protein htpG OS=Chlorobium phaeobacteroides (strain DSM 266) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 45/88 (51.14%), Postives = 66/88 (75.00%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ Y++ EIFLRELISN+SDAL K+RF +LTD+S +++   L I I  D   +++ I D+G GMT+ +L+ NLGT+ARSGT  F++AL
Sbjct:   27 HSLYTHPEIFLRELISNASDALSKVRFNALTDESIINSDAGLAIRITLDPEAHTIVIEDNGTGMTEEELILNLGTVARSGTLGFLQAL 114          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RICPR (Chaperone protein htpG OS=Rickettsia prowazekii GN=htpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L+
Sbjct:   21 HSLYSNKEIFMRELISNASDACDKLRYLSQSNSELIAGDSNFKIIVKVDKDNGQIIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLS 109          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RICBR (Chaperone protein htpG OS=Rickettsia bellii (strain RML369-C) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L+
Sbjct:   21 HSLYSNKEIFMRELISNASDACDKLRYLSQSEAELVAGDSNFKITVKGDKNNGQVIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLS 109          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RICB8 (Chaperone protein htpG OS=Rickettsia bellii (strain OSU 85-389) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L+
Sbjct:   21 HSLYSNKEIFMRELISNASDACDKLRYLSQSEAELVAGDSNFKITVKGDKNNGQVIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLS 109          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_NEOSM1.227e-1752.27Chaperone protein htpG OS=Neorickettsia sennetsu (... [more]
HTPG_METS41.227e-1751.69Chaperone protein htpG OS=Methylobacterium sp. (st... [more]
HTPG_SHESH1.602e-1747.19Chaperone protein htpG OS=Shewanella sediminis (st... [more]
HTPG_SHELP1.602e-1747.19Chaperone protein htpG OS=Shewanella loihica (stra... [more]
HTPG_RICCK1.602e-1750.56Chaperone protein htpG OS=Rickettsia canadensis (s... [more]
HTPG_PSEMY1.602e-1749.44Chaperone protein htpG OS=Pseudomonas mendocina (s... [more]
HTPG_CHLPD1.602e-1751.14Chaperone protein htpG OS=Chlorobium phaeobacteroi... [more]
HTPG_RICPR2.093e-1750.56Chaperone protein htpG OS=Rickettsia prowazekii GN... [more]
HTPG_RICBR2.093e-1750.56Chaperone protein htpG OS=Rickettsia bellii (strai... [more]
HTPG_RICB82.093e-1750.56Chaperone protein htpG OS=Rickettsia bellii (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
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