CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_CLOPE (Chaperone protein htpG OS=Clostridium perfringens GN=htpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 670
            N+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I I P+K   +L+I D GIGMT+ +L  NLG IA+SG+ +F
Sbjct:   19 NSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQF 102          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_CLOP1 (Chaperone protein htpG OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=htpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 670
            N+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I I P+K   +L+I D GIGMT+ +L  NLG IA+SG+ +F
Sbjct:   19 NSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQF 102          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BACSU (Chaperone protein htpG OS=Bacillus subtilis GN=htpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 670
            N+ Y+ KEIFLRELISNSSDA+DKI +++LTD +    +   +I +  DK   +L+I D+GIGMTK +L  +LGTIA+SG+  F
Sbjct:   19 NSIYTQKEIFLRELISNSSDAIDKIYYKALTDDALTFDKDSYYIKVAADKDARTLTISDTGIGMTKDELEQHLGTIAKSGSLAF 102          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_ALISL (Chaperone protein htpG OS=Aliivibrio salmonicida (strain LFI1238) GN=htpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA DK+RF++L++    +   +L + I  +   N+L+I D+GIGM + D++ +LGTIA+SGT +F   L+
Sbjct:   27 HSLYSNKEIFLRELISNASDASDKLRFKALSNGDLYEGNADLGVKISFNVEANTLTISDNGIGMGREDVIEHLGTIAKSGTADFFSKLS 115          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_AZOC5 (Chaperone protein htpG OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=htpG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 45/94 (47.87%), Postives = 69/94 (73.40%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL--DAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 694
            ++ YS+K++FLRELISN++DA +K+R+E++T  + L  DA+P + + I  D     L++ D+GIGM++ ++V  LGTIARSGTK FME + A A
Sbjct:   27 HSVYSDKDVFLRELISNAADACEKLRYEAITTPALLGEDARPRITLAI--DAEGGRLTVEDNGIGMSRDEMVEALGTIARSGTKAFMERIEAAA 118          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_DESVH (Chaperone protein htpG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELF--IHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ Y+N+EIFLREL+SN+SDALDK+RF  +  +      P+L   I I  DK    L+I D+G+GMT+ +L++NLGTIARSG+++F+  LAA
Sbjct:   23 HSLYTNREIFLRELVSNASDALDKLRF--IRSRGDAVVAPDLAPGIDISVDKEARILTIADTGVGMTRQELMDNLGTIARSGSEQFVADLAA 112          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_VIBSL (Chaperone protein htpG OS=Vibrio splendidus (strain LGP32) GN=htpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 41/89 (46.07%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA DK+RF++L++        +L + +  +   N+L+I D+GIGM++ +++ +LGTIA+SGT +F   L+
Sbjct:   27 HSLYSNKEIFLRELISNASDAADKLRFQALSNGDLYQGDADLGVKLSFNAEANTLTISDNGIGMSRDNVIEHLGTIAKSGTADFFSKLS 115          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_TREPA (Chaperone protein htpG OS=Treponema pallidum GN=htpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YS+KEIFLRELISN+SDALDK+++E+L D +      E  I I  ++    L + D+GIGM   DL  NLGTIARSGTK F+  L
Sbjct:   19 HSLYSHKEIFLRELISNASDALDKLKYEALVDGTYKQLHCEARIDIAFEEDAQRLVVRDTGIGMNAEDLRANLGTIARSGTKAFLSTL 106          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SALTO (Chaperone protein htpG OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=htpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 697
            ++ YSNK++FLRELISN+SDALDK+R  SL DK       +L I I  D    +L++ D+GIGM++ ++V  +GTIA+SGT E +  L   AD
Sbjct:   21 HSIYSNKDVFLRELISNASDALDKLRLASLRDKDLDVDTADLHIAIEIDPDARTLTVRDNGIGMSRDEVVQVIGTIAKSGTAELLRTLRESAD 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_PHOPR (Chaperone protein htpG OS=Photobacterium profundum GN=htpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLRELISN+SDA DK+RF +L+     +   ++ + +  +    +L++ D+GIGM + D++ +LGTIA+SGTK+F   L+
Sbjct:   28 HSLYSNKEIFLRELISNASDAADKLRFRALSQPDLFENDADIGVKLSFNAEAGTLTVSDNGIGMNRDDVIEHLGTIAKSGTKDFFSKLS 116          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_CLOPE1.039e-1650.00Chaperone protein htpG OS=Clostridium perfringens ... [more]
HTPG_CLOP11.039e-1650.00Chaperone protein htpG OS=Clostridium perfringens ... [more]
HTPG_BACSU1.039e-1652.38Chaperone protein htpG OS=Bacillus subtilis GN=htp... [more]
HTPG_ALISL1.039e-1648.31Chaperone protein htpG OS=Aliivibrio salmonicida (... [more]
HTPG_AZOC51.357e-1647.87Chaperone protein htpG OS=Azorhizobium caulinodans... [more]
HTPG_DESVH2.314e-1650.00Chaperone protein htpG OS=Desulfovibrio vulgaris (... [more]
HTPG_VIBSL3.022e-1646.07Chaperone protein htpG OS=Vibrio splendidus (strai... [more]
HTPG_TREPA3.022e-1652.27Chaperone protein htpG OS=Treponema pallidum GN=ht... [more]
HTPG_SALTO3.022e-1648.39Chaperone protein htpG OS=Salinispora tropica (str... [more]
HTPG_PHOPR3.022e-1644.94Chaperone protein htpG OS=Photobacterium profundum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
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