CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_SALAI (Chaperone protein htpG OS=Salinispora arenicola (strain CNS-205) GN=htpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 697
            ++ YSNK++FLRELISN+SDALDK+R  S+ DK       +L I I  D+   +L++ D+GIGMT+ ++V  +GTIA+SGT E +  L    D
Sbjct:   21 HSIYSNKDVFLRELISNASDALDKLRLASMRDKDLDVDTSDLHIAIEVDQDARTLTVRDNGIGMTRDEVVQVIGTIAKSGTAELLRKLRETTD 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RHIME (Chaperone protein htpG OS=Rhizobium meliloti GN=htpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YS+K +FLRELISN++DA +K+R+E++     L + P   I +  D+ N  L I D+GIGM + +LV +LGTIARSGT+ FME + A
Sbjct:   26 HSVYSDKNVFLRELISNAADACEKLRYEAIVAPELLGSDPASRITLTLDEENARLVIEDNGIGMGRDELVESLGTIARSGTRAFMERIEA 115          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_MYCPA (Chaperone protein htpG OS=Mycobacterium paratuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L I I  DK   +L+I D+GIGMT+A++V+ +GT+A+SGT E  + L
Sbjct:   23 HSVYSNKDSFLRELISNASDALDKLRLEAFRNKDLDVDTSDLHIQIEVDKDARTLTIRDNGIGMTRAEVVDLIGTLAKSGTAELRQQL 110          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_MYCA1 (Chaperone protein htpG OS=Mycobacterium avium (strain 104) GN=htpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L I I  DK   +L+I D+GIGMT+A++V+ +GT+A+SGT E  + L
Sbjct:   23 HSVYSNKDSFLRELISNASDALDKLRLEAFRNKDLDVDTSDLHIQIEVDKDARTLTIRDNGIGMTRAEVVDLIGTLAKSGTAELRQQL 110          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BORGA (Chaperone protein htpG OS=Borrelia garinii GN=htpG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YS+KEIFLRELISN+SDA+DK++F SLT++   +   E  I I  D  + S+ I D+GIGM + DL N+LG IA+SGTKEF+  L
Sbjct:   18 HSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKFKNIALEPKIEITFD--DKSILIKDNGIGMNEQDLTNHLGVIAKSGTKEFINNL 103          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_MYCGI (Chaperone protein htpG OS=Mycobacterium gilvum (strain PYR-GCK) GN=htpG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 703
            ++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L I I+ DK   +L++ D+GIGM++ ++V  +GT+A+SGT E  + L    D +
Sbjct:   23 HSVYSNKDSFLRELISNASDALDKLRLEAFRNKDLDVDTSDLHIEIVVDKEARTLTVRDNGIGMSRDEVVRLIGTLAKSGTAELRQQLREAKDAN 117          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BORBU (Chaperone protein htpG OS=Borrelia burgdorferi GN=htpG PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YS+KEIFLRELISN+SDA+DK++F SLT++   +   E  I I  D  + S+ I D+GIGM + DL N+LG IA+SGTKEF+  L
Sbjct:   18 HSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKFKNIALEPKIEISFD--DKSILIKDNGIGMDEQDLTNHLGVIAKSGTKEFINNL 103          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: TRAP1_DICDI (TNF receptor-associated protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  422 TFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL-DAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 697
            + Y+ KE+F+RELISN+SDA++K+R   LT+ S + DA     I I  D+ N +L I DSGIGMTK +++ NLG I  SG+ +F++ L    D
Sbjct:  117 SLYTEKEVFIRELISNASDAIEKVRHTQLTNASMIEDASIPFEIKISTDEDNKTLIIQDSGIGMTKDEMIKNLGKIGYSGSSDFIKKLGENPD 209          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_STRCO (Chaperone protein htpG OS=Streptomyces coelicolor GN=htpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL-----AAGAD 697
            ++ YSNK++FLREL+SN+SDALDK+R  +L D +      +L I +  DK   +L++ D+GIGM+  ++   +GTIA SGT +F+E L     AAGAD
Sbjct:   21 HSVYSNKDVFLRELVSNASDALDKLRLAALRDDAPDADVSDLHIELEVDKDARTLTVRDNGIGMSYDEVTRLIGTIANSGTAKFLEELREAKDAAGAD 118          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_NITHX (Chaperone protein htpG OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 41/88 (46.59%), Postives = 69/88 (78.41%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL--DAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 676
            ++ YS+K++FLRELISN++DA +++R+++++D + L  DA+P++ I I  D     L++ D+GIGM++ ++V+ LGTIARSGTK F+E
Sbjct:   29 HSVYSDKDVFLRELISNAADACERLRYDAISDPALLADDARPQIAITI--DAERRQLTVDDNGIGMSRDEMVDALGTIARSGTKAFIE 114          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_SALAI5.155e-1647.31Chaperone protein htpG OS=Salinispora arenicola (s... [more]
HTPG_RHIME5.155e-1647.78Chaperone protein htpG OS=Rhizobium meliloti GN=ht... [more]
HTPG_MYCPA6.733e-1650.00Chaperone protein htpG OS=Mycobacterium paratuberc... [more]
HTPG_MYCA16.733e-1650.00Chaperone protein htpG OS=Mycobacterium avium (str... [more]
HTPG_BORGA6.733e-1653.41Chaperone protein htpG OS=Borrelia garinii GN=htpG... [more]
HTPG_MYCGI1.148e-1544.21Chaperone protein htpG OS=Mycobacterium gilvum (st... [more]
HTPG_BORBU1.148e-1553.41Chaperone protein htpG OS=Borrelia burgdorferi GN=... [more]
TRAP1_DICDI1.500e-1546.24TNF receptor-associated protein 1 homolog, mitocho... [more]
HTPG_STRCO1.500e-1545.92Chaperone protein htpG OS=Streptomyces coelicolor ... [more]
HTPG_NITHX1.500e-1546.59Chaperone protein htpG OS=Nitrobacter hamburgensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
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