CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YS+K +FLRELISN +DA +K+R+E++   S L A  E  I +  D+ +  L + D+GIGM + +++  LGTIARSGT+ FME +A
Sbjct:   27 HSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAADAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERIA 115          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_MYCUA (Chaperone protein htpG OS=Mycobacterium ulcerans (strain Agy99) GN=htpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L I    DK   +L++ D+GIGMT+A++V+ +GT+A+SGT E    L
Sbjct:   23 HSVYSNKDSFLRELISNASDALDKLRIEAFRNKDLEVDTSDLHIETEADKGARTLTVRDNGIGMTRAEVVDLIGTLAKSGTAELRAQL 110          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_FRASC (Chaperone protein htpG OS=Frankia sp. (strain CcI3) GN=htpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 697
            ++ YSNK+IFLRELISN+SDALDK+R  SL          +L I I  D    +L++ D+GIGM++ ++V  +GTIA+SGT E +  L    D
Sbjct:   23 HSIYSNKDIFLRELISNASDALDKLRIASLVKDGPRVDSADLRIEIEADVNARTLTVRDNGIGMSRDEVVGLIGTIAKSGTAELLRKLRESED 115          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_HELHP (Chaperone protein htpG OS=Helicobacter hepaticus GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YS+KEIFLRELISN+SDALDK+ + +LT ++      E  I I  D+   +++I D+GIGM + D+  +LG IA+SGTK F+  L+
Sbjct:   20 HSLYSHKEIFLRELISNASDALDKLSYLTLTQENLKTLSFEPRIDISFDEEKKTITIEDNGIGMNENDMKEHLGIIAKSGTKSFLSQLS 108          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RHOSR (Chaperone protein htpG OS=Rhodococcus sp. (strain RHA1) GN=htpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 703
            ++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L + I  D    +L++ D+GIGM+  ++V+ +GT+A+SGT +    L    D +
Sbjct:   23 HSVYSNKDSFLRELISNASDALDKLRLEAFRNKELHVDTSDLHVEIEVDAEKRTLTVRDNGIGMSHDEVVDLIGTLAKSGTADLRRKLKEAKDAA 117          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_RHIEC4.364e-1546.07Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
HTPG_MYCUA5.699e-1547.73Chaperone protein htpG OS=Mycobacterium ulcerans (... [more]
HTPG_FRASC5.699e-1546.24Chaperone protein htpG OS=Frankia sp. (strain CcI3... [more]
HTPG_HELHP1.658e-1447.19Chaperone protein htpG OS=Helicobacter hepaticus G... [more]
HTPG_RHOSR1.075e-1341.05Chaperone protein htpG OS=Rhodococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
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