CF834726

Overview
NameCF834726
Unique NameCF834726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 46/88 (52.27%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSN+E+FLRELISN+SDA+DK+RFE+L  +S  +  PEL I +  D    ++++ID+GIGM++ D++ NLGTIA SGT+ F+E L
Sbjct:   25 HSVYSNREVFLRELISNASDAIDKLRFEALQQESLYEDDPELKIRVEADPEARTVTVIDNGIGMSREDVIENLGTIAHSGTRRFLEQL 112          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BUCBP (Chaperone protein htpG OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=htpG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 46/88 (52.27%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSN+EIF RELISN++DA+DK++F +++     +    L+I I  +K NNSL+I D+GIGM   D++NNLGTIA+SGTKEF++ L
Sbjct:   26 HSLYSNREIFFRELISNAADAIDKLKFNAISAPELYENDTNLYIRIFSNKNNNSLTISDNGIGMKYEDIINNLGTIAKSGTKEFIKTL 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_BUCAI (Chaperone protein htpG OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=htpG PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSNKEIFLRELISNSSDA+DK+RFES++     +   ++ I I  +K   +L I D+GIGMTK D + NLGTIA+SGTK F+++L
Sbjct:   24 HSLYSNKEIFLRELISNSSDAIDKLRFESISSPELYENDSDVKIQISINKAQRTLIISDNGIGMTKEDTIENLGTIAKSGTKSFLQSL 111          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_WOLPM (Chaperone protein htpG OS=Wolbachia pipientis wMel GN=htpG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 50/95 (52.63%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 703
            ++ Y+NK+IFLRELISN+SDA DK+R+ES  + + LD   EL I I  +K  N L I D+GIGM + DL++NLGTIA SGT++F++A+    D S
Sbjct:   29 HSLYTNKDIFLRELISNASDACDKLRYESQLNPNLLDLSDELKITISSNKDKNELYITDNGIGMNRQDLIDNLGTIASSGTQKFLDAIKNSKDSS 123          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_NITMU (Chaperone protein htpG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=htpG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 45/88 (51.14%), Postives = 71/88 (80.68%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSNKEIFLRELISN+SDA DK+RFE+LTD +  ++  +L I +  DK   ++++ D+GIGM++ ++++++GTIA+SGT+EF +AL
Sbjct:   25 HSLYSNKEIFLRELISNASDAADKLRFEALTDGALYESDSDLKIRVSYDKEARTITVADNGIGMSRQEVIDHIGTIAKSGTREFFDAL 112          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 46/89 (51.69%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN+SDA DK+RF++L+D S      +L + +  DK + +++I D+G+GMT+ D++NNLGTIA+SGT EF   L+
Sbjct:   25 HSLYSNKEIFLRELVSNASDAADKLRFKALSDNSLYGDDSDLHVRVSVDKDSRTITISDNGVGMTRDDVMNNLGTIAKSGTAEFFGQLS 113          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_WOLTR (Chaperone protein htpG OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 48/95 (50.53%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 703
            ++ Y+NK+IFLREL+SN+SDA DK+R+ES  + + LD+  EL I I  +K  N L + D+GIGM++ DL+ NLGTIA SGT++F++A+    D S
Sbjct:   30 HSLYTNKDIFLRELVSNASDACDKLRYESQLNPNLLDSSGELKITISSNKDENELYVTDNGIGMSRQDLIGNLGTIASSGTQKFLDAIKNSKDSS 124          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_VESOH (Chaperone protein htpG OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 46/88 (52.27%), Postives = 72/88 (81.82%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 682
            ++ YSNKEIFLRELISN+SDA+DK++F+SL+D + ++ +  L IHI  +K  N+++I D+GIGM++ ++  N+GTIA SGTK+F+++L
Sbjct:   22 HSLYSNKEIFLRELISNASDAVDKLKFKSLSDDTLIEGKEALQIHIDVNKDANTITITDNGIGMSEVEVNKNIGTIANSGTKKFLKSL 109          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_TREDE (Chaperone protein htpG OS=Treponema denticola GN=htpG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 50/90 (55.56%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 688
            ++ YSNKEIFLREL+SN+SDALDK+++ +L+D++    + E  I I  D T N+L++ D+G+GM + DL NNLGTIARSGTK F++ LAA
Sbjct:   19 HSLYSNKEIFLRELVSNASDALDKLKYLTLSDEAYKQIKFEPRIDICFDDTANTLTVRDTGLGMNEEDLKNNLGTIARSGTKAFLDQLAA 108          
BLAST of CF834726 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  419 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 685
            ++ YSNKEIFLREL+SN+SDA DK+RFE++ + S L+   +L I I  D    +L+I D+GIGM++ + ++NLGTIARSGTKEF + L+
Sbjct:   23 HSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLTITDNGIGMSRDEAIHNLGTIARSGTKEFFQQLS 111          
The following BLAST results are available for this feature:
BLAST of CF834726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_HALHL1.186e-2052.27Chaperone protein htpG OS=Halorhodospira halophila... [more]
HTPG_BUCBP1.186e-2052.27Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_BUCAI1.549e-2055.68Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_WOLPM2.022e-2052.63Chaperone protein htpG OS=Wolbachia pipientis wMel... [more]
HTPG_NITMU2.022e-2051.14Chaperone protein htpG OS=Nitrosospira multiformis... [more]
HTPG_IDILO2.022e-2051.69Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]
HTPG_WOLTR2.641e-2050.53Chaperone protein htpG OS=Wolbachia sp. subsp. Bru... [more]
HTPG_VESOH2.641e-2052.27Chaperone protein htpG OS=Vesicomyosocius okutanii... [more]
HTPG_TREDE2.641e-2055.56Chaperone protein htpG OS=Treponema denticola GN=h... [more]
HTPG_RALEH2.641e-2053.93Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834726 ID=CF834726; Name=CF834726; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTATACATTGCACTCGAAGCTAGCAAATATCTTTTCTGACTTGAAG
AATATGAAAACTCTTCCTGGCGCAGGTATGAGCGATCCGTCAGAAGGTTA
CTTACTCCCCCCTTCCAGTATTGCTGATGATGATGTTGGGAATGACAATC
TTGATCTTATTGTTATTCCTCAATATGGGAGAAATCCTGATTATTATGGG
TAAGTGTCTGCAATCTGGATGATGATATATATAATTAAATAAAAAGATGG
GTACAGTTATTATCTATCAATTATAAGAGTGTCAATTTAGTTCAGTTCAC
TTACAAAAATCTCTTATACAAGAGATTATCTTTGTTTGCGTTCATGTACT
TTGTCTTCTTTAATTAATAAATAAAACTATTGTGTAAAAAAAAAAAAAAG
TTGTTGAGTTTGATCATCAACACCTTTTACAGTAACAAGGAGATCTTTCT
TCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGATCAGATTTG
AAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGCTTTTCATT
CACATTATCCCTGATAAGACCAACAACTCATTGTCTATTATTGACAGTGG
TATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTACAATTGCTA
GGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGGCGGATGTG
AGC
back to top