CF834727

Overview
NameCF834727
Unique NameCF834727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_HUMAN (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 90/133 (67.67%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_CHILA (60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 90/133 (67.67%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_BOVIN (60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 90/133 (67.67%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_PIG (60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 89/133 (66.92%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ K++G+IL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 88/135 (65.19%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658
            LSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV++                G  H++  ED + WF+ KY+ V+L K
Sbjct:   40 LSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 89/133 (66.92%), Postives = 101/133 (75.94%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FGFG+QEHIDLGIKYDP  GIYGMDF+VVL                 G  HRV KE+ +KWFQ KY+G+IL
Sbjct:   50 LTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_ICTPU (60S ribosomal protein L11 OS=Ictalurus punctatus GN=rpl11 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.347e-44
Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSD+G FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR+ K +AM+WFQ KY+GVIL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_DICDI (60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.318e-43
Identity = 84/133 (63.16%), Postives = 101/133 (75.94%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPV+SKARYTVRSF IRRNE+IA +VTVRG+KA ++LE GLKV+E+EL  RNFS  G FGFGIQEHIDLGIKYDPS GIYGMDFFVVL                 G QH++ KEDA+ WF+  Y+G+++
Sbjct:   66 LTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRARNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGFRVAHKKRAGAKVGFQHKIGKEDAVNWFKTTYDGIVI 198          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_SPOFR (60S ribosomal protein L11 OS=Spodoptera frugiperda GN=RpL11 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.334e-43
Identity = 92/138 (66.67%), Postives = 102/138 (73.91%), Query Frame = -3
Query:  248 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRV-TKEDAMKWFQVKYEGVILNKSQ 658
            L+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                  I   V TKEDAMKWFQ KY+G+ILN  +
Sbjct:   58 LTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGPTRIQCTTQKTQDWQGWIPPIVLTKEDAMKWFQQKYDGIILNSKK 195          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11B_YEAST (60S ribosomal protein L11-B OS=Saccharomyces cerevisiae GN=RPL11B PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.056e-41
Identity = 85/135 (62.96%), Postives = 99/135 (73.33%), Query Frame = -3
Query:  254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658
            LSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIKYDPS GI+GMDF+VV+                 G  H+ TKED + WF+ KY+  +L+K
Sbjct:   40 LSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174          
The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL11_HUMAN1.218e-4567.6760S ribosomal protein L11 OS=Homo sapiens GN=RPL11... [more]
RL11_CHILA1.218e-4567.6760S ribosomal protein L11 OS=Chinchilla lanigera G... [more]
RL11_BOVIN1.218e-4567.6760S ribosomal protein L11 OS=Bos taurus GN=RPL11 P... [more]
RL11_PIG4.630e-4566.9260S ribosomal protein L11 OS=Sus scrofa GN=RPL11 P... [more]
RL11_SCHPO6.047e-4565.1960S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_CAEEL6.047e-4566.9260S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_ICTPU1.347e-4466.9260S ribosomal protein L11 OS=Ictalurus punctatus G... [more]
RL11_DICDI3.318e-4363.1660S ribosomal protein L11 OS=Dictyostelium discoid... [more]
RL11_SPOFR4.334e-4366.6760S ribosomal protein L11 OS=Spodoptera frugiperda... [more]
RL11B_YEAST4.056e-4162.9660S ribosomal protein L11-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTTTAGAAACATGAATAATCACTTGAGAACAATAAAGGCCATA
TTCAGTATCTGCGATTTTTAGTGCAGCCCAGCCATAATCTTGATAATAAA
ATTTAAATAGACAAATAACAAAATATCTTGAACTACCAAAAGCATCTAAC
TCAGGTTTGCAAAACGCCAAGTAATAGCCAGTGTCTACAAACATCAACAC
TATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATATTCTG
GGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTTCATTG
CATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGCACCTA
CGGCGTCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAGAAATC
CATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATCAATAT
GCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTCCGACGC
AGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGCATTGC
CTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACGTCTGA
TCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTGTCTGT
CCACTGAGTT
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