CF834727
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20 Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = -3 Query: 266 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKED----AMKWFQVKYEGV 658 L GQ P+ +A+ T R FGIRR E IA VT+RG+KA Q+L+ L+ + +L NF + G F FGIQEHI++ G++YDP GI+GMD V LE +H++TKE+ AM+ + K EG+ Sbjct: 48 LVGQKPIRRRAKQTNRDFGIRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTKEEGIVFAMEELKAKVEGL 183
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19 Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L +Y+L +F + G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 51 LTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18 Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 L+GQ P+ KA+ T R FGIRR E IA VT+RG KA +LL+ L + L +F + G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 51 LTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18 Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 ++GQ V A+ T+ +F I++NE I C VT+RG +A Q LE+ L + + L+R F G FGI+EH D G+KYDP+ G++GMD VV++ HRVT ED++ + Y Sbjct: 36 ITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPGERICKRRIATRKIPTNHRVTLEDSIAFLNDSY 164
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18 Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = -3 Query: 284 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 658 L+G PV++ ++ T+R FGIR+ ++I VT+RG +A + L L+ Y L + +F D G FGI EH+ L G +YDP GI+GMD + LE +HRVTKE+AM++ + Sbjct: 47 LTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17 Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 51 LTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17 Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 ++G TPV S A+ T+ +FGIR+ I+C VT+RG+ A + LE+ +K+ E ++ R F G F FGI+EH D G YDP GI+G+D VVL+ ++ VT EDA + + +Y Sbjct: 35 ITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17 Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = -3 Query: 248 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAM----KWFQVKYEGVILNKSQ 658 L+GQ P+ ++A+ T SFGIR+ I VT+RG KA + L++ + + E L +F D G F FGI EHID G KYDP GI+GMD V LE +HR+T+E+A+ K F VK E V+L + + Sbjct: 43 LTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17 Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 ++GQ V A+ T+ +F I++NE I C VT+RG KA + LE+ L + E L R F G FGI+EH D G++YDP+ G++GMD VVL+ HRVT +DA+ + Y Sbjct: 32 ITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIAARKIPAGHRVTVDDAIAFLNESY 160
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.395e-17 Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 ++GQT V S A+ T+ +F I++ E I C VT+RG+ A LE+ L + E L F G FG++EH D G++YDP+ GI+GMD VV+ H++TKED + +F+ KY Sbjct: 36 ITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGYRVSKRRIAKRKIPTSHKITKEDTISFFKDKY 164 The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bpback to top |