CF834727

Overview
NameCF834727
Unique NameCF834727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:201..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = -3
Query:  266 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKED----AMKWFQVKYEGV 658
            L GQ P+  +A+ T R FGIRR E IA  VT+RG+KA Q+L+  L+  + +L   NF + G F FGIQEHI++ G++YDP  GI+GMD  V LE                  +H++TKE+    AM+  + K EG+
Sbjct:   48 LVGQKPIRRRAKQTNRDFGIRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTKEEGIVFAMEELKAKVEGL 183          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19
Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +Y+L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   51 LTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA +LL+  L   +  L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   51 LTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            ++GQ  V   A+ T+ +F I++NE I C VT+RG +A Q LE+ L + +  L+R  F   G   FGI+EH D  G+KYDP+ G++GMD  VV++                   HRVT ED++ +    Y
Sbjct:   36 ITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPGERICKRRIATRKIPTNHRVTLEDSIAFLNDSY 164          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = -3
Query:  284 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 658
            L+G  PV++ ++ T+R FGIR+ ++I   VT+RG +A + L   L+   Y L + +F D G   FGI EH+ L G +YDP  GI+GMD  + LE                  +HRVTKE+AM++ +
Sbjct:   47 LTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +  L   +F + G   FGI EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   51 LTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            ++G TPV S A+ T+ +FGIR+   I+C VT+RG+ A + LE+ +K+ E ++  R F   G F FGI+EH D  G  YDP  GI+G+D  VVL+                 ++  VT EDA  + + +Y
Sbjct:   35 ITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = -3
Query:  248 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAM----KWFQVKYEGVILNKSQ 658
            L+GQ P+ ++A+ T  SFGIR+   I   VT+RG KA + L++  +  + E   L   +F D G F FGI EHID  G KYDP  GI+GMD  V LE                  +HR+T+E+A+    K F VK E V+L + +
Sbjct:   43 LTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            ++GQ  V   A+ T+ +F I++NE I C VT+RG KA + LE+ L + E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:   32 ITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIAARKIPAGHRVTVDDAIAFLNESY 160          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.395e-17
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            ++GQT V S A+ T+ +F I++ E I C VT+RG+ A   LE+ L + E  L    F   G   FG++EH D  G++YDP+ GI+GMD  VV+                    H++TKED + +F+ KY
Sbjct:   36 ITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGYRVSKRRIAKRKIPTSHKITKEDTISFFKDKY 164          
The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL5_PYRKO1.772e-2041.9150S ribosomal protein L5P OS=Pyrococcus kodakaraen... [more]
RL5_PYRHO4.364e-1939.5350S ribosomal protein L5P OS=Pyrococcus horikoshii... [more]
RL5_PYRFU3.694e-1839.5350S ribosomal protein L5P OS=Pyrococcus furiosus G... [more]
RL5_METBF6.301e-1837.2150S ribosomal protein L5P OS=Methanosarcina barker... [more]
RL5_SULSO8.230e-1838.1050S ribosomal protein L5P OS=Sulfolobus solfataric... [more]
RL5_PYRAB1.075e-1738.7650S ribosomal protein L5P OS=Pyrococcus abyssi GN=... [more]
RL5_METHJ1.075e-1737.9850S ribosomal protein L5P OS=Methanospirillum hung... [more]
RL5_METJA1.833e-1739.3150S ribosomal protein L5P OS=Methanocaldococcus ja... [more]
RL5_METAC1.833e-1737.9850S ribosomal protein L5P OS=Methanosarcina acetiv... [more]
RL5_METBU2.395e-1737.2150S ribosomal protein L5P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTTTAGAAACATGAATAATCACTTGAGAACAATAAAGGCCATA
TTCAGTATCTGCGATTTTTAGTGCAGCCCAGCCATAATCTTGATAATAAA
ATTTAAATAGACAAATAACAAAATATCTTGAACTACCAAAAGCATCTAAC
TCAGGTTTGCAAAACGCCAAGTAATAGCCAGTGTCTACAAACATCAACAC
TATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATATTCTG
GGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTTCATTG
CATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGCACCTA
CGGCGTCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAGAAATC
CATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATCAATAT
GCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTCCGACGC
AGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGCATTGC
CTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACGTCTGA
TCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTGTCTGT
CCACTGAGTT
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