CF834727

Overview
NameCF834727
Unique NameCF834727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:201..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 52/124 (41.94%), Postives = 65/124 (52.42%), Query Frame = -3
Query:  290 GQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKW 652
            G  P+ S AR T+ +FGIR+ + I C  T+RG KAM  LE  LK    E  L  R F  TG FGFGI+EH D  G  YDP  GIYGMD   V+E                  +  V +E++MK+
Sbjct:   38 GAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.335e-17
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = -3
Query:  296 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXGIQHRVTKEDAM 658
            L+GQ PVF KA+ T+R+FG+R+ E IA  VT+RG+KA+  L+  L    + +   +  + G   FGI+EHI + G+KYDP  GI GMD  + ++                   +HRVT+E+ M
Sbjct:   58 LTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = -3
Query:  254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658
            L+GQ+PV + A+ T  +FGIR+   I   VT+RG KA + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   43 LTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            ++GQ  V   A+ T+ +F I++NE I C VT+RG +A + L +  ++ E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:   36 ITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIATRKIPTDHRVTVDDAIAFLNESY 164          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQ PV+++A+ T  SFGIRR + I   V +R ++A++ L+  L   + EL    F + G   FG++EHI L G++YDP  GI+GMD  V LE                  +HR+TKE+ + + + +++  +L
Sbjct:   52 LTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = -3
Query:  272 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 658
            +SGQ PV + ++ T   FGIR+ + IAC VT+RG++A ++L+  L+     L    F + G    GI EHID+ G+KYDP  GI+GM+  V  E                  +HRV++E+A+++ + K++
Sbjct:   35 MSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            ++ QTP+ S A+ T  +F IR+   I C VT+RG  A   +++ L +    +    F  +G F FGI+EH D  G+ YDP  GI+GMD  VVLE                  + RV KEDA+ + + +Y
Sbjct:   32 ITKQTPIRSVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNGIRITRRRMQKKKLPEKQRVKKEDAIAFLKKEY 160          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METM7 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658
            L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    S  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   43 LTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658
            L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   43 LTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181          
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = -3
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   43 LTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL5_METLZ3.127e-1741.9450S ribosomal protein L5P OS=Methanocorpusculum la... [more]
RL5_AERPE5.335e-1738.2150S ribosomal protein L5P OS=Aeropyrum pernix GN=r... [more]
RL5_METMP1.188e-1636.6950S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METMA1.552e-1635.6650S ribosomal protein L5P OS=Methanosarcina mazei ... [more]
RL5_METKA2.027e-1635.0750S ribosomal protein L5P OS=Methanopyrus kandleri... [more]
RL5_METTH4.516e-1635.3850S ribosomal protein L5P OS=Methanobacterium ther... [more]
RL5_METB65.898e-1635.6650S ribosomal protein L5P OS=Methanoregula boonei ... [more]
RL5_METM71.006e-1536.6950S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METM61.314e-1535.9750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METVS1.716e-1537.8850S ribosomal protein L5P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTTTAGAAACATGAATAATCACTTGAGAACAATAAAGGCCATA
TTCAGTATCTGCGATTTTTAGTGCAGCCCAGCCATAATCTTGATAATAAA
ATTTAAATAGACAAATAACAAAATATCTTGAACTACCAAAAGCATCTAAC
TCAGGTTTGCAAAACGCCAAGTAATAGCCAGTGTCTACAAACATCAACAC
TATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATATTCTG
GGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTTCATTG
CATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGCACCTA
CGGCGTCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAGAAATC
CATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATCAATAT
GCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTCCGACGC
AGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGCATTGC
CTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACGTCTGA
TCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTGTCTGT
CCACTGAGTT
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