CF834727
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17 Identity = 52/124 (41.94%), Postives = 65/124 (52.42%), Query Frame = -3 Query: 290 GQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKW 652 G P+ S AR T+ +FGIR+ + I C T+RG KAM LE LK E L R F TG FGFGI+EH D G YDP GIYGMD V+E + V +E++MK+ Sbjct: 38 GAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.335e-17 Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = -3 Query: 296 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXGIQHRVTKEDAM 658 L+GQ PVF KA+ T+R+FG+R+ E IA VT+RG+KA+ L+ L + + + + G FGI+EHI + G+KYDP GI GMD + ++ +HRVT+E+ M Sbjct: 58 LTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16 Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = -3 Query: 254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658 L+GQ+PV + A+ T +FGIR+ I VT+RG KA + L+ + K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 43 LTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16 Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 ++GQ V A+ T+ +F I++NE I C VT+RG +A + L + ++ E L R F G FGI+EH D G++YDP+ G++GMD VVL+ HRVT +DA+ + Y Sbjct: 36 ITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIATRKIPTDHRVTVDDAIAFLNESY 164
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16 Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = -3 Query: 260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658 L+GQ PV+++A+ T SFGIRR + I V +R ++A++ L+ L + EL F + G FG++EHI L G++YDP GI+GMD V LE +HR+TKE+ + + + +++ +L Sbjct: 52 LTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16 Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = -3 Query: 272 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 658 +SGQ PV + ++ T FGIR+ + IAC VT+RG++A ++L+ L+ L F + G GI EHID+ G+KYDP GI+GM+ V E +HRV++E+A+++ + K++ Sbjct: 35 MSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16 Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 ++ QTP+ S A+ T +F IR+ I C VT+RG A +++ L + + F +G F FGI+EH D G+ YDP GI+GMD VVLE + RV KEDA+ + + +Y Sbjct: 32 ITKQTPIRSVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNGIRITRRRMQKKKLPEKQRVKKEDAIAFLKKEY 160
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METM7 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl5p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15 Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = -3 Query: 254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658 L+GQ+PV + A+ T +FGIR+ I VT+RG A + L S K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 43 LTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQAKFDTEVVRE 181
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15 Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = -3 Query: 254 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 658 L+GQ+PV + A+ T +FGIR+ I VT+RG A + L + K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 43 LTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15 Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 L+GQ PV + A+ T +FGIR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E +H V KE+A+++ + K+ Sbjct: 43 LTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174 The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bpback to top |