CF834727
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13 Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = -3 Query: 266 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGV 658 +SG+ P A+ T R +G+R+ E I VT+RGD A LL+ L+ K + R F + G + FGI+EHID+ G+KY+PS GI G+ V L G H +T ++A K + VK GV Sbjct: 40 ISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGIRTRSKHKASVGKSHIITSQEA-KDYLVKEFGV 170
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_SULTO (50S ribosomal protein L5P OS=Sulfolobus tokodaii GN=rpl5p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13 Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = -3 Query: 260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHR-VTKEDAMKWFQVKYEGVIL 658 L+G PV++ A+ T+R FG+R+ I VT+RG KA + L L + + +F + G FGI EH+ + G +YDP GI+GMD + L +HR V+KE+AM++ + + I+ Sbjct: 42 LTGVKPVYTIAKRTIREFGVRKGAPIGVKVTLRGKKAEEFLNKVLAAVGHRIKASSFDEYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGFRVARRRRKKAHIPKRHRTVSKEEAMEFLKQNFNVTIV 176
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13 Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = -3 Query: 275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658 ++GQ PV + A+ T +F IR+ I +T+RG KA + L+ + +L +F G F FGI EHID KYDPS GIYGMD V E +H V+KE+A+ + + Y Sbjct: 43 ITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHIDFPNQKYDPSVGIYGMDICVTFEKPGYSVKRRKAKRANIPAKHLVSKEEAINYIETIY 174
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_CALMQ (50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl5p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13 Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = -3 Query: 284 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 658 L+G+TP + A +++ FGIRR E I VT+R ++A+ L L ++ L +F + G FGI+EHI + G +YDP+ GI+G D V L G HRV++E+ +++FQ Sbjct: 63 LTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLRRNEAVWFLLRALAAVDFTLREESF-NAGNVSFGIREHILVPGSRYDPALGIFGFDVAVTLARPGFRVQYRRRARADVGKDHRVSREETIRFFQ 187
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_NATPD (50S ribosomal protein L5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl5p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12 Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = -3 Query: 272 QTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 649 Q PV + A+ T++ F +R + I T+RG+ A + LE+ L + + + R+ F +TG F FG++EH + +YDP GIYG+D V L HR+T EDA+ + + ++ Sbjct: 47 QQPVRTTAQKTIQDFEVREGDPIGTKATLRGEDAEEFLETALPLADID--RKQFDETGNFSFGVEEHTEFPSQEYDPQIGIYGLDVTVNLVRPGYRVHKRDKVSRSIPSNHRLTAEDAVTFLESNFD 171
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12 Identity = 44/130 (33.85%), Postives = 64/130 (49.23%), Query Frame = -3 Query: 272 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 658 ++GQ V +KA+ FG+R+ + I VT+R D A+ LE L + + RR F +TG FGI+EH D +YDP+ GIYGMD V L HR+ EDA+ + ++ Sbjct: 43 ITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12 Identity = 44/130 (33.85%), Postives = 64/130 (49.23%), Query Frame = -3 Query: 272 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 658 ++GQ V +KA+ FG+R+ + I VT+R D A+ LE L + + RR F +TG FGI+EH D +YDP+ GIYGMD V L HR+ EDA+ + ++ Sbjct: 43 ITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_PICTO (50S ribosomal protein L5P OS=Picrophilus torridus GN=rpl5p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12 Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = -3 Query: 260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQH-RVTKEDAMKWFQVKYEGVIL 658 L+ P F+ A+ TVR F IR+ I VT+R D A+ L+ K+Y++ +F G FGI ++ D G+KYDP GI+GMD +V + R++KE+ +K+ Q + I+ Sbjct: 40 LTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLRKDDALSFLKEAFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKYDPDIGIFGMDIAIVFRRRGGYRIEKRRIKKMHIPKKMRISKEETIKYLQENFNVKII 174
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12 Identity = 37/130 (28.46%), Postives = 67/130 (51.54%), Query Frame = -3 Query: 272 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 658 ++ Q V + ++ T+ FGIR+ + I VT+RG+ A L++ L++ ++ + F DTG FG+++H D +YDP+ GIYG+D + +HR+T EDA + + ++ Sbjct: 42 ITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTDFPSQEYDPNIGIYGLDVTTTIVRPGYRVSKRDKATASIPSKHRMTAEDATAFLETNFD 169
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_THEVO (50S ribosomal protein L5P OS=Thermoplasma volcanium GN=rpl5p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = -3 Query: 380 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE 658 L+G P + A+ +VR F IR+ I VT+R D A+ L L VK+Y++ +F G FGI ++ D G+KYDP GI+GMD +VL+ Sbjct: 35 LTGHKPTQTLAKKSVRDFNIRKRLPIGVKVTLRKDDAVNFLNKALYVKDYKIPDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVLK 128 The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bpback to top |