CF834727

Overview
NameCF834727
Unique NameCF834727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 41/129 (31.78%), Postives = 61/129 (47.29%), Query Frame = -3 
Query:  275 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 658
            ++GQT V + A      FG R  + I   VT+RG  A   LE  L +    +  R F +TG F FG++EH      +YDP  GIYG+D  V L                   +HR+T  DA+++ + ++
Sbjct:   42 IAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168
The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL5_HALWD2.564e-1131.7850S ribosomal protein L5P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTTTAGAAACATGAATAATCACTTGAGAACAATAAAGGCCATA
TTCAGTATCTGCGATTTTTAGTGCAGCCCAGCCATAATCTTGATAATAAA
ATTTAAATAGACAAATAACAAAATATCTTGAACTACCAAAAGCATCTAAC
TCAGGTTTGCAAAACGCCAAGTAATAGCCAGTGTCTACAAACATCAACAC
TATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATATTCTG
GGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTTCATTG
CATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGCACCTA
CGGCGTCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAGAAATC
CATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATCAATAT
GCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTCCGACGC
AGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGCATTGC
CTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACGTCTGA
TCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTGTCTGT
CCACTGAGTT
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