CF834728

Overview
NameCF834728
Unique NameCF834728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:65..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11A_YEAST (60S ribosomal protein L11-A OS=Saccharomyces cerevisiae GN=RPL11A PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 112/171 (65.50%), Postives = 131/171 (76.61%), Query Frame = 1
Query:   31 KLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 543
            K  NPMR++ ++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIKYDPS GI+GMDF+VV+                    H+ TKED + WF+ KY+  +L+K
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_DICDI (60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.511e-57
Identity = 109/173 (63.01%), Postives = 131/173 (75.72%), Query Frame = 1
Query:   19 SSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 537
            + + K  N MR + ++KLVLNI VGESGDRL RAAKVLEQL+GQTPV+SKARYTVRSF IRRNE+IA +VTVRG+KA ++LE GLKV+E+EL  RNFS  G FGFGIQEHIDLGIKYDPS GIYGMDFFVVL                   QH++ KEDA+ WF+  Y+G+++
Sbjct:   26 TKKSKKDNVMRGLRIEKLVLNICVGESGDRLVRAAKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRARNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGFRVAHKKRAGAKVGFQHKIGKEDAVNWFKTTYDGIVI 198          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_LEICH (60S ribosomal protein L11 OS=Leishmania chagasi GN=RPL11 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.973e-57
Identity = 114/173 (65.90%), Postives = 131/173 (75.72%), Query Frame = 1
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVI 534
            M +E K +NPMREI+V+KL +NI VGESGDRLTRA+KVLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NFSDTG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL                    H VTKE+AMKWF+  ++G+I
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_LEIMA (60S ribosomal protein L11 OS=Leishmania major GN=RPL11 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.396e-57
Identity = 113/173 (65.32%), Postives = 131/173 (75.72%), Query Frame = 1
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVI 534
            M +E K +NPMREI+V+KL +NI VGESGDRLTRA+KVLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NF+DTG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL                    H VTKE+AMKWF+  ++G+I
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_SPOFR (60S ribosomal protein L11 OS=Spodoptera frugiperda GN=RpL11 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.498e-57
Identity = 117/171 (68.42%), Postives = 130/171 (76.02%), Query Frame = 1
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRV-TKEDAMKWFQVKYEGVILNKSQ 549
            N MR + ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                  I   V TKEDAMKWFQ KY+G+ILN  +
Sbjct:   25 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGPTRIQCTTQKTQDWQGWIPPIVLTKEDAMKWFQQKYDGIILNSKK 195          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_CANGA (60S ribosomal protein L11 OS=Candida glabrata GN=RPL11 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.279e-56
Identity = 110/171 (64.33%), Postives = 131/171 (76.61%), Query Frame = 1
Query:   31 KLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 543
            K  N MRE+ ++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGIQEHIDLGIKYDPS GI+GMDF++V+                    H+ +KED + WF+ +Y+  +L+K
Sbjct:    4 KTQNVMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRNRNFSTTGNFGFGIQEHIDLGIKYDPSIGIFGMDFYIVMGRPGNRIARRKRCRATVGNSHKTSKEDTIAWFKQRYDADVLDK 174          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_TETTH (60S ribosomal protein L11 OS=Tetrahymena thermophila GN=RPL11 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.496e-52
Identity = 99/166 (59.64%), Postives = 125/166 (75.30%), Query Frame = 1
Query:   31 KLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEG 528
            K  N MRE+ + KLV+N  VGESGD+LT+AAKVL+ LSGQ PVFS+ARYT+RSFGI+RNEK+A +VT+RGDKA  +L  GLKVKE EL ++NFS+TG FGFGIQEHIDLG+KYDPSTGI+GMDF+VVLE                     ++KE+ + WF+ ++EG
Sbjct:    4 KKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEECINWFKTEFEG 169          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_ENCCU (60S ribosomal protein L11 OS=Encephalitozoon cuniculi GN=RPL11 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.263e-45
Identity = 93/164 (56.71%), Postives = 115/164 (70.12%), Query Frame = 1
Query:   46 MREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 537
            MREI ++KL ++I   ESG +L RAAKVLEQL+GQ PV SKAR T+R+FGIRRNEKIA +V V G KA +LL + L+VKEYEL    FS+ GCFGFGI+EHIDLG+KYDP+ GI+GMDFFV+L                   + RV  EDA KWF   +EGV++
Sbjct:    1 MREISIKKLSIHICARESGAKLDRAAKVLEQLTGQKPVTSKARMTIRNFGIRRNEKIAVHVNVSGKKAYELLNTALRVKEYELKESCFSNNGCFGFGIEEHIDLGLKYDPNIGIFGMDFFVILARPGDRVSKRKRCKSRVGNKQRVYAEDAKKWFVENFEGVLV 164          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_TOXCA (60S ribosomal protein L11 (Fragment) OS=Toxocara canis GN=RPL11 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.507e-44
Identity = 89/114 (78.07%), Postives = 98/114 (85.96%), Query Frame = 1
Query:   25 EKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 366
            EKK  N MRE+ +QKL LNI VGE GDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FG G+QEHIDLGIK
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGEFGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGLGVQEHIDLGIK 125          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_ARCFU (50S ribosomal protein L5P OS=Archaeoglobus fulgidus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.197e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    4 QQTRMSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 513
            Q   M  +    NPMRE+++ K+V+NI VGESG+R  +A  +LE+L  Q P  + A+ T+++FGIR+ E I   VT+RG+KA++ L+  L VKE  L R++  + G F FGI EHIDL G+ YDP  GI+GMD  V L+                   HRVTKED ++W +
Sbjct:    2 QAVEMEKKAGNENPMREVVLDKVVINIGVGESGERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEAIGIKVTLRGEKALKFLKDALTVKENRLSRKSIGE-GYFAFGIAEHIDLPGVDYDPDVGIFGMDVCVSLKRRGYRVARRRRKKAKIATSHRVTKEDTIRWLE 171          
The following BLAST results are available for this feature:
BLAST of CF834728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RL11A_YEAST1.157e-5765.5060S ribosomal protein L11-A OS=Saccharomyces cerev... [more]
RL11_DICDI1.511e-5763.0160S ribosomal protein L11 OS=Dictyostelium discoid... [more]
RL11_LEICH1.973e-5765.9060S ribosomal protein L11 OS=Leishmania chagasi GN... [more]
RL11_LEIMA4.396e-5765.3260S ribosomal protein L11 OS=Leishmania major GN=R... [more]
RL11_SPOFR7.498e-5768.4260S ribosomal protein L11 OS=Spodoptera frugiperda... [more]
RL11_CANGA1.279e-5664.3360S ribosomal protein L11 OS=Candida glabrata GN=R... [more]
RL11_TETTH2.496e-5259.6460S ribosomal protein L11 OS=Tetrahymena thermophi... [more]
RL11_ENCCU2.263e-4556.7160S ribosomal protein L11 OS=Encephalitozoon cunic... [more]
RL11_TOXCA9.507e-4478.0760S ribosomal protein L11 (Fragment) OS=Toxocara c... [more]
RL5_ARCFU2.197e-3242.6950S ribosomal protein L5P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834728 ID=CF834728; Name=CF834728; organism=Citrus sinensis; type=EST; length=802bp
CATCAGCAAACCCGCATGTCTTCAGAGAAGAAACTTTCGAACCCCATGAG
GGAAATTATGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTG
GAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAG
ACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAG
ACGTAATGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAA
TGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGT
CGGAATTTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATAT
TGATCTTGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATT
TCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGACGCCGTAGG
TGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAAT
GAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGA
ATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGT
TGATGTTTGTAGACACTGGCTATTACTTGGCGTTTTGCAAACCTGAGTTA
GATGCTTTTGGTAGTTCAAGATATTTTGTTATTTGTCTATTTAAATTTTA
TTATCAAGATTATGGGCTAGCTGCACTAAAAATCGCAGATACTGAATATG
GACACTGTTTTTTCTCAAGTGATTATTCATGTTTCTAAAAAAAAAAAAAA
AA
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