CF834728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.860e-31 Identity = 75/170 (44.12%), Postives = 107/170 (62.94%), Query Frame = 1 Query: 37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKED----AMKWFQVKYEGV 531 ++PMR+ + K+ +NI VGESG+RLT+A +LEQL GQ P+ +A+ T R FGIRR E IA VT+RG+KA Q+L+ L+ + +L NF + G F FGIQEHI++ G++YDP GI+GMD V LE +H++TKE+ AM+ + K EG+ Sbjct: 14 AHPMRKPRIAKVTINIGVGESGERLTKAETMLEQLVGQKPIRRRAKQTNRDFGIRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTKEEGIVFAMEELKAKVEGL 183
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29 Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 1 Query: 37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522 ++PMR +QK+ +NI VGESG+RLT+A +L++L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L +Y+L +F + G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 17 AHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.614e-29 Identity = 75/178 (42.13%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAM----KWFQVKYEGVILNKSQ 549 NPM + ++K+V+N VGESGDRLT+ A+V+E+L+GQ P+ ++A+ T SFGIR+ I VT+RG KA + L++ + + E L +F D G F FGI EHID G KYDP GI+GMD V LE +HR+T+E+A+ K F VK E V+L + + Sbjct: 10 NPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.639e-29 Identity = 68/163 (41.72%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522 ++PMR ++K+ +NI VGESG+RLT+A +L+QL+GQ P+ KA+ T R FGIRR E IA VT+RG KA +LL+ L + L +F + G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 17 AHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.474e-28 Identity = 64/159 (40.25%), Postives = 99/159 (62.26%), Query Frame = 1 Query: 40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 513 NPMR++ + K+ +NI +GESGDRL +A ++L++L+G PV++ ++ T+R FGIR+ ++I VT+RG +A + L L+ Y L + +F D G FGI EH+ L G +YDP GI+GMD + LE +HRVTKE+AM++ + Sbjct: 14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28 Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522 ++PMR+ ++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 5.599e-28 Identity = 65/156 (41.67%), Postives = 97/156 (62.18%), Query Frame = 1 Query: 40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXXIQHRVTKEDAM 501 +PMR + K+ +NIS+G+SG+RL RAA+VLE+L+GQ PVF KA+ T+R+FG+R+ E IA VT+RG+KA+ L+ L + + + + G FGI+EHI + G+KYDP GI GMD + ++ +HRVT+E+ M Sbjct: 25 SPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27 Identity = 66/168 (39.29%), Postives = 103/168 (61.31%), Query Frame = 1 Query: 37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 537 SNPMR+ V K+ +NI VGESGDRL +A ++L++L+GQ PV+++A+ T SFGIRR + I V +R ++A++ L+ L + EL F + G FG++EHI L G++YDP GI+GMD V LE +HR+TKE+ + + + +++ +L Sbjct: 18 SNPMRKPRVGKVTVNIGVGESGDRLQKAYELLQELTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.779e-27 Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1 Query: 43 PMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 543 PM++ +QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T +FGIR+ I VT+RG KA + L+ + K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27 Identity = 63/163 (38.65%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 525 NPM E+ + K+ LNI VGE G++L RA ++LE++SGQ PV + ++ T FGIR+ + IAC VT+RG++A ++L+ L+ L F + G GI EHID+ G+KYDP GI+GM+ V E +HRV++E+A+++ + K++ Sbjct: 2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164 The following BLAST results are available for this feature:
BLAST of CF834728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834728 ID=CF834728; Name=CF834728; organism=Citrus sinensis; type=EST; length=802bpback to top |