CF834728

Overview
NameCF834728
Unique NameCF834728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:65..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.860e-31
Identity = 75/170 (44.12%), Postives = 107/170 (62.94%), Query Frame = 1
Query:   37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKED----AMKWFQVKYEGV 531
            ++PMR+  + K+ +NI VGESG+RLT+A  +LEQL GQ P+  +A+ T R FGIRR E IA  VT+RG+KA Q+L+  L+  + +L   NF + G F FGIQEHI++ G++YDP  GI+GMD  V LE                  +H++TKE+    AM+  + K EG+
Sbjct:   14 AHPMRKPRIAKVTINIGVGESGERLTKAETMLEQLVGQKPIRRRAKQTNRDFGIRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTKEEGIVFAMEELKAKVEGL 183          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 1
Query:   37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522
            ++PMR   +QK+ +NI VGESG+RLT+A  +L++L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +Y+L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   17 AHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.614e-29
Identity = 75/178 (42.13%), Postives = 106/178 (59.55%), Query Frame = 1
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAM----KWFQVKYEGVILNKSQ 549
            NPM +  ++K+V+N  VGESGDRLT+ A+V+E+L+GQ P+ ++A+ T  SFGIR+   I   VT+RG KA + L++  +  + E   L   +F D G F FGI EHID  G KYDP  GI+GMD  V LE                  +HR+T+E+A+    K F VK E V+L + +
Sbjct:   10 NPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.639e-29
Identity = 68/163 (41.72%), Postives = 100/163 (61.35%), Query Frame = 1
Query:   37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522
            ++PMR   ++K+ +NI VGESG+RLT+A  +L+QL+GQ P+  KA+ T R FGIRR E IA  VT+RG KA +LL+  L   +  L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   17 AHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.474e-28
Identity = 64/159 (40.25%), Postives = 99/159 (62.26%), Query Frame = 1
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 513
            NPMR++ + K+ +NI +GESGDRL +A ++L++L+G  PV++ ++ T+R FGIR+ ++I   VT+RG +A + L   L+   Y L + +F D G   FGI EH+ L G +YDP  GI+GMD  + LE                  +HRVTKE+AM++ +
Sbjct:   14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28
Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = 1
Query:   37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522
            ++PMR+  ++K+ +NI VGESG+RLT+A  +LE+L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +  L   +F + G   FGI EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.599e-28
Identity = 65/156 (41.67%), Postives = 97/156 (62.18%), Query Frame = 1
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXXIQHRVTKEDAM 501
            +PMR   + K+ +NIS+G+SG+RL RAA+VLE+L+GQ PVF KA+ T+R+FG+R+ E IA  VT+RG+KA+  L+  L    + +   +  + G   FGI+EHI + G+KYDP  GI GMD  + ++                   +HRVT+E+ M
Sbjct:   25 SPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27
Identity = 66/168 (39.29%), Postives = 103/168 (61.31%), Query Frame = 1
Query:   37 SNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 537
            SNPMR+  V K+ +NI VGESGDRL +A ++L++L+GQ PV+++A+ T  SFGIRR + I   V +R ++A++ L+  L   + EL    F + G   FG++EHI L G++YDP  GI+GMD  V LE                  +HR+TKE+ + + + +++  +L
Sbjct:   18 SNPMRKPRVGKVTVNIGVGESGDRLQKAYELLQELTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.779e-27
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   43 PMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 543
            PM++  +QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG KA + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 63/163 (38.65%), Postives = 99/163 (60.74%), Query Frame = 1
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 525
            NPM E+ + K+ LNI VGE G++L RA ++LE++SGQ PV + ++ T   FGIR+ + IAC VT+RG++A ++L+  L+     L    F + G    GI EHID+ G+KYDP  GI+GM+  V  E                  +HRV++E+A+++ + K++
Sbjct:    2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164          
The following BLAST results are available for this feature:
BLAST of CF834728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RL5_PYRKO1.860e-3144.1250S ribosomal protein L5P OS=Pyrococcus kodakaraen... [more]
RL5_PYRHO1.333e-2941.7250S ribosomal protein L5P OS=Pyrococcus horikoshii... [more]
RL5_METJA6.614e-2942.1350S ribosomal protein L5P OS=Methanocaldococcus ja... [more]
RL5_PYRFU8.639e-2941.7250S ribosomal protein L5P OS=Pyrococcus furiosus G... [more]
RL5_SULSO1.474e-2840.2550S ribosomal protein L5P OS=Sulfolobus solfataric... [more]
RL5_PYRAB2.513e-2841.1050S ribosomal protein L5P OS=Pyrococcus abyssi GN=... [more]
RL5_AERPE5.599e-2841.6750S ribosomal protein L5P OS=Aeropyrum pernix GN=r... [more]
RL5_METKA2.128e-2739.2950S ribosomal protein L5P OS=Methanopyrus kandleri... [more]
RL5_METMP2.779e-2739.7750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METTH4.740e-2738.6550S ribosomal protein L5P OS=Methanobacterium ther... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834728 ID=CF834728; Name=CF834728; organism=Citrus sinensis; type=EST; length=802bp
CATCAGCAAACCCGCATGTCTTCAGAGAAGAAACTTTCGAACCCCATGAG
GGAAATTATGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTG
GAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAG
ACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAG
ACGTAATGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAA
TGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGT
CGGAATTTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATAT
TGATCTTGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATT
TCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGACGCCGTAGG
TGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAAT
GAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGA
ATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGT
TGATGTTTGTAGACACTGGCTATTACTTGGCGTTTTGCAAACCTGAGTTA
GATGCTTTTGGTAGTTCAAGATATTTTGTTATTTGTCTATTTAAATTTTA
TTATCAAGATTATGGGCTAGCTGCACTAAAAATCGCAGATACTGAATATG
GACACTGTTTTTTCTCAAGTGATTATTCATGTTTCTAAAAAAAAAAAAAA
AA
back to top