CF834728

Overview
NameCF834728
Unique NameCF834728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:65..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.633e-19
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   46 MREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 525
            MRE  ++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.133e-19
Identity = 55/170 (32.35%), Postives = 87/170 (51.18%), Query Frame = 1
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522
            MS      + MRE  ++K+V++++VGE G  L  A ++L++++GQT V + A      FG R  + I   VT+RG  A   LE  L +    +  R F +TG F FG++EH      +YDP  GIYG+D  V L                   +HR+T  DA+++ + ++
Sbjct:    1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 42/142 (29.58%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   13 RMSSEKKLSNPMREIMVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 408
            ++  E    NPM+  +++K+V+N+ VGE+     ++T AA  L +++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   21 KLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   13 RMSSEKKLSNPMREIMVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 408
            +M  +    NPM    + K+V+N+ VGE+     ++T AA  L Q++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   21 KMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162          
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   37 SNPMREIMVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 408
            SN M+   ++K+V+N+ VGE+     ++  A   L +++GQ PV +KAR ++  F +R    + C VT+R D+  + L+  +     +VK++  L+  +F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162          
The following BLAST results are available for this feature:
BLAST of CF834728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RL5_HALS31.633e-1934.7850S ribosomal protein L5P OS=Halobacterium salinar... [more]
RL5_HALWD2.133e-1932.3550S ribosomal protein L5P OS=Haloquadratum walsbyi... [more]
RL5_AZOC52.138e-1129.5850S ribosomal protein L5 OS=Azorhizobium caulinoda... [more]
RL5_XANP22.792e-1130.2850S ribosomal protein L5 OS=Xanthobacter autotroph... [more]
RL5_PHEZH8.123e-1132.0950S ribosomal protein L5 OS=Phenylobacterium zucin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834728 ID=CF834728; Name=CF834728; organism=Citrus sinensis; type=EST; length=802bp
CATCAGCAAACCCGCATGTCTTCAGAGAAGAAACTTTCGAACCCCATGAG
GGAAATTATGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTG
GAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAG
ACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAG
ACGTAATGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAA
TGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGT
CGGAATTTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATAT
TGATCTTGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATT
TCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGACGCCGTAGG
TGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAAT
GAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGA
ATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGT
TGATGTTTGTAGACACTGGCTATTACTTGGCGTTTTGCAAACCTGAGTTA
GATGCTTTTGGTAGTTCAAGATATTTTGTTATTTGTCTATTTAAATTTTA
TTATCAAGATTATGGGCTAGCTGCACTAAAAATCGCAGATACTGAATATG
GACACTGTTTTTTCTCAAGTGATTATTCATGTTTCTAAAAAAAAAAAAAA
AA
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