CF834728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.633e-19 Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 1 Query: 46 MREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 525 MRE ++K+V+++ VG+ G L A +LE ++GQ V +KA+ FG+R+ + I VT+R D A+ LE L + + RR F +TG FGI+EH D +YDP+ GIYGMD V L HR+ EDA+ + ++ Sbjct: 12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.133e-19 Identity = 55/170 (32.35%), Postives = 87/170 (51.18%), Query Frame = 1 Query: 16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 522 MS + MRE ++K+V++++VGE G L A ++L++++GQT V + A FG R + I VT+RG A LE L + + R F +TG F FG++EH +YDP GIYG+D V L +HR+T DA+++ + ++ Sbjct: 1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11 Identity = 42/142 (29.58%), Postives = 80/142 (56.34%), Query Frame = 1 Query: 13 RMSSEKKLSNPMREIMVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 408 ++ E NPM+ +++K+V+N+ VGE+ ++T AA L +++GQ PV ++AR + +F +R N+ + VT+R + + ++ + +V+++ L ++F G + G++EHI I YD I+GMD V Sbjct: 21 KLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11 Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 13 RMSSEKKLSNPMREIMVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 408 +M + NPM + K+V+N+ VGE+ ++T AA L Q++GQ PV ++AR + +F +R N+ + VT+R + + ++ + +V+++ L ++F G + G++EHI I YD I+GMD V Sbjct: 21 KMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11 Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 37 SNPMREIMVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 408 SN M+ ++K+V+N+ VGE+ ++ A L +++GQ PV +KAR ++ F +R + C VT+R D+ + L+ + +VK++ L+ +F G + G++EHI I YD I+GMD V Sbjct: 29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162 The following BLAST results are available for this feature:
BLAST of CF834728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834728 ID=CF834728; Name=CF834728; organism=Citrus sinensis; type=EST; length=802bpback to top |