CF834730

Overview
NameCF834730
Unique NameCF834730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6272 contig Csv1_Contig6272:321..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRDX5_RAT (Peroxiredoxin-5, mitochondrial OS=Rattus norvegicus GN=Prdx5 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 679
            I VGD +P   +   +     + + +++L  +KK +LF VPGAFTP CS+ HLPGFVE++  LK+KG   VAC+SVNDAFV   W        +V LL+D  G F K     LD S   +    R +R++++ + GVVK LN+E +G   T S A ++L  L
Sbjct:   55 IKVGDTIPSVEVFEGEPG---KKVNLAELFKDKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDAFVTAEWGRAHQAEGKVQLLADPTGAFGKETDLLLDDSLVSLFGNRRLKRFSMVIDKGVVKALNVEPDGTGLTCSLAPNILSQL 213          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: MALF3_MALFU (Putative peroxiredoxin (Fragment) OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = -2
Query:  242 VGDKLPDATLSYFDSAGELQTITVSDLTSN---------KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 673
            +G  +P+AT +Y   + EL+   V  + ++         KK ++ AVPGAFTPTC+  H+P +VEK  ELKSKGVD V  IS ND FV+ AW       D +    D N  F+K     LDLS K  G+G+R+ RYAL+A +  V+   ++EG
Sbjct:    2 IGSTIPNATFAYVPYSPELEDHKVCGMPTSFQSHERWKGKKVVIVAVPGAFTPTCTANHVPPYVEKIQELKSKGVDEVVVISANDPFVLSAWGITEHAKDNLTFAQDVNCEFSKHFNATLDLSSK--GMGLRTARYALIANDLKVEYFGIDEG 152          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRDX5_PAPHA (Peroxiredoxin-5, mitochondrial OS=Papio hamadryas GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 679
            I VGD +P   +   +   +   + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KGV  +AC+SVNDAFV   W     +  +V LL+D  G F K     LD S   +    R +R++++ ++G+VK LN+E +G   T S A  ++  L
Sbjct:   57 IKVGDAIPAVEVFEGEPGNK---VNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKVEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPSIISQL 215          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRDX5_HUMAN (Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=PRDX5 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 65/162 (40.12%), Postives = 95/162 (58.64%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 679
            I VGD +P   +   +   +   + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KGV  VAC+SVNDAFV   W        +V LL+D  G F K     LD S   +    R +R++++ ++G+VK LN+E +G   T S A +++  L
Sbjct:   56 IKVGDAIPAVEVFEGEPGNK---VNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 214          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PMPA_CANBO (Putative peroxiredoxin-A OS=Candida boidinii GN=PMPA PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 65/166 (39.16%), Postives = 96/166 (57.83%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYF--DSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLA-ENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            I  GD+ P     Y+     GE   + +S     KK ++ +VPGAFTP C+++HLPG+++    + SKGVD V  IS ND FV+K WK+ LG  D  +++ +SD N   TK +G  +DLS   +GLG RS R AL+   +G+V+   +E GG    S A+ ++  L
Sbjct:    4 IKRGDRFPTTDDVYYIPPEGGEPGPLELSKFVKTKKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVISQNDPFVLKGWKKELGAADAKKLVFVSDPNLKLTKKLGSTIDLS--AIGLGTRSGRLALIVNRSGIVEYAAIENGGEVDVSTAQKIIAKL 167          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PMPB_CANBO (Putative peroxiredoxin-B OS=Candida boidinii GN=PMPB PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 64/166 (38.55%), Postives = 95/166 (57.23%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYF--DSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLA-ENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            I  GD+ P     Y+     GE     +S     KK ++ +VPGAFTP C+++HLPG+++    + SKGVD V  I+ ND FV+K WK+ LG  D  +++ +SD N   TK +G  +DLS   +GLG RS R AL+   +G+V+   +E GG    S A+ ++  L
Sbjct:    4 IKRGDRFPTTDDVYYIPPEGGEPGAFELSKFVKTKKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVITQNDPFVLKGWKKELGAADAKKLIFVSDPNLKLTKKLGSTIDLSS--IGLGTRSGRLALIVNRSGIVEYAAIENGGEVDVSTAQKIIAKL 167          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 56/142 (39.44%), Postives = 86/142 (60.56%), Query Frame = -2
Query:  206 AGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGA-FTFSGAEDML 628
            + +  T  +SD+   KK ++F +PGA+T  CSQ+H+P +     + K+KG+D+V C+SVND F +  W E LG  D +    D +G F K++G + DLS     LG RS R++   E+G VK +N+EE  + F  +GAE +L
Sbjct:   59 SSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLS--AALLGPRSERWSAYVEDGKVKAVNVEEAPSDFKVTGAEVIL 198          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRDX5_CERAE (Peroxiredoxin-5, mitochondrial OS=Cercopithecus aethiops GN=PRDX5 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 64/162 (39.51%), Postives = 94/162 (58.02%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 679
            I VGD +P   +   +   +   + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KGV  +AC+SVNDAFV   W        +V LL+D  G F K     LD S   +    R +R++++ ++G+VK LN+E +G   T S A  ++  L
Sbjct:   57 IKVGDAIPAVEVFEGEPGNK---VNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVLACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPSIISQL 215          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRDX5_BOVIN (Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PRDX5 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 679
            I VGD +P   +   +   +   + +++L   KK +LF +PGAFTP CS+ HLPGFVE++  LK+KG+  VAC++VND FV + W        +V LL+D +G F K     LD S   +    R +R++++ E+G+VK LN+E +G   T S A ++L  L
Sbjct:   61 IKVGDAIPSVEVFEKEPGNK---VNLAELFKGKKGVLFGLPGAFTPGCSKTHLPGFVEQADALKAKGIQVVACLTVNDVFVTEEWARAHKAEGKVRLLADPSGTFGKETDLLLDDSLLFLFGNHRLKRFSMVIEDGIVKSLNVEPDGTGLTCSLAPNILSQL 219          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PMP20_EMENI (Putative peroxiredoxin pmp20 OS=Emericella nidulans GN=AN8692 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 67/173 (38.73%), Postives = 95/173 (54.91%), Query Frame = -2
Query:  197 ISVGDKLP-DATLSYFDSAGELQTITVSDLTSN---------KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGI-NDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG-GAFTFSGAEDMLKAL 679
            +  GD  P D   SY     E   IT   +  N         KK ILFA+PGAFTP CS +H+P ++E+  E+++KGVD VA ++ NDAFVM AW +  G+ ND++L LSD    F+K+IG   +          R++RYA++ ++G V    LE       FS AE ++K L
Sbjct:    4 LKAGDSFPADVVFSYIPWTEEKGEITSCGIPINYYASKEWADKKVILFALPGAFTPVCSARHVPEYIERLPEIRAKGVDVVAVLAYNDAFVMSAWGKANGVKNDDILFLSDPEAKFSKSIGWADEEG--------RTKRYAIVLDHGKVTYAALEPAKNHLEFSSAETVIKHL 168          
The following BLAST results are available for this feature:
BLAST of CF834730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PRDX5_RAT7.476e-2540.74Peroxiredoxin-5, mitochondrial OS=Rattus norvegicu... [more]
MALF3_MALFU7.476e-2541.18Putative peroxiredoxin (Fragment) OS=Malassezia fu... [more]
PRDX5_PAPHA1.275e-2439.51Peroxiredoxin-5, mitochondrial OS=Papio hamadryas ... [more]
PRDX5_HUMAN1.275e-2440.12Peroxiredoxin-5, mitochondrial OS=Homo sapiens GN=... [more]
PMPA_CANBO1.665e-2439.16Putative peroxiredoxin-A OS=Candida boidinii GN=PM... [more]
PMPB_CANBO2.841e-2438.55Putative peroxiredoxin-B OS=Candida boidinii GN=PM... [more]
PRX2F_ARATH3.710e-2439.44Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha... [more]
PRDX5_CERAE3.710e-2439.51Peroxiredoxin-5, mitochondrial OS=Cercopithecus ae... [more]
PRDX5_BOVIN4.846e-2438.89Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PR... [more]
PMP20_EMENI4.102e-2338.73Putative peroxiredoxin pmp20 OS=Emericella nidulan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834730 ID=CF834730; Name=CF834730; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTGGGATAAAAAATTAAATTGAGCAGGATAAAAAT
CCAAACAGCTCTGAAAATTCAAATGCACAAGGAGAAGTAGAAATTTCAAA
ACCCGAAACACGAGTTTTTAGTAACAAAGACACATTATTCAACACTCTAA
TGAAAGTTAAATTATTAAAAAAAAAAAAACTATCTCACCGAAATCACAGA
GCTTTGAGCATGTCCTCAGCTCCGCTGAAAGTAAAGGCGCCGCCCTCCTC
CAAATTGAGCACCTTAACGACGCCGTTTTCTGCCAAAAGGGCGTACCTCC
TGGACCTAACTCCCAATCCCATGGGCTTGTCACTCAAGTCGAGCTCACAG
CCAATAGCCTTAGTGAACACCCCGTTCCCATCAGACAACAAAAGCACTTC
ATCGTTGATTCCAAGATTCTCCTTCCAGGCCTTCATAACGAAGGCGTCGT
TCACGGAAATGCAGGCGACAGTGTCGACGCCTTTGGATTTCAACTCGGCG
GATTTCTCGACGAAGCCCGGGAGGTGTTTTTGGGAGCAGGTGGGGGTGAA
GGCGCCGGGGACGGCGAATAGGATTGCTTTTTTATTGGAGGTGAGGTCGG
AGACGGTGATGGTCTGGAGCTCGCCAGCGGAGTCGAAGTAGGAGAGGGTG
GCGTCGGGGAGCTTGTCGCCCACGGAAATGGCG
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