CF834730

Overview
NameCF834730
Unique NameCF834730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6272 contig Csv1_Contig6272:321..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PMP20_ASPFU (Putative peroxiredoxin pmp20 OS=Aspergillus fumigatus GN=pmp20 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 67/173 (38.73%), Postives = 95/173 (54.91%), Query Frame = -2
Query:  197 ISVGDKLP-DATLSYFDSAGELQTITVSDLTSN---------KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAW-KENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG-GAFTFSGAEDMLKAL 679
            +  GD  P D   SY   + +   IT   +  N         KK ILFA+PGAFTP CS +H+P ++EK  E+++KGVD VA ++ NDA+VM AW K N    D++L LSD +  F+K+IG   +          R++RYAL+ ++G +    LE       FS AE +LK L
Sbjct:    4 LKAGDSFPSDVVFSYIPWSEDKGEITACGIPINYNASKEWADKKVILFALPGAFTPVCSARHVPEYIEKLPEIRAKGVDVVAVLAYNDAYVMSAWGKANQVTGDDILFLSDPDARFSKSIGWADEEG--------RTKRYALVIDHGKITYAALEPAKNHLEFSSAETVLKHL 168          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: Y1621_SYNY3 (Putative peroxiredoxin sll1621 OS=Synechocystis sp. (strain PCC 6803) GN=sll1621 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  248 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE 607
            T   +   KK +LF++PGAFTPTCS  HLP + +   E ++ GVD + C+SVNDAFVM  W + +G  D+V LL DGNG FT+ +G  ++ S+  +G G+RS RY++   +G ++ + +E
Sbjct:   32 TTEQIFGGKKVVLFSLPGAFTPTCSSNHLPRYEQLFEEFQALGVDDIICLSVNDAFVMFQWGKQIGA-DKVKLLPDGNGEFTRKMGMLVEKSN--LGFGMRSWRYSMFVNDGKIEKMFIE 148          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PMP20_LIPKO (Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  197 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLL-SDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 586
            +K  ++ A+PGAFTPTC+  H+P FVEK   LKS GVD V  +S ND FV  A+ + LG+ DE  +  SD    F+K+ G  LDL   P   G R+ RYA++  NGVVK +  +  G    SG + +L AL
Sbjct:   40 DKTVVIVAIPGAFTPTCTANHIPPFVEKFTALKSAGVDAVIVLSANDPFVQSAFGKALGVTDEAFIFASDPGAEFSKSAGLSLDL---PPAFGTRTARYAIIVSNGVVKYVEKDSEGV-AGSGVDAVLAAL 166          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: YRP2_RHIET (Putative peroxiredoxin in rpoN2 3'region OS=Rhizobium etli PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = -2
Query:  242 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 607
            T  D  S K+ ILF++PGAFTP CS   LP F     E K  G+D + C+SVNDAFVM AW ++ G+ + V L+ DG+G FT+ +G  + ++   +G G+RS RYA +  NGVV+    EEG
Sbjct:   33 TTDDYFSGKRVILFSLPGAFTPICSTFQLPDFESLYVEFKKNGIDDIYCLSVNDAFVMNAWGKSQGLKN-VKLIPDGSGEFTRKMG--MLVAKDNLGFGLRSWRYAAVINNGVVEGWFEEEG 151          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 54/142 (38.03%), Postives = 81/142 (57.04%), Query Frame = -2
Query:  206 AGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGA-FTFSGAEDML 628
            A    T  + D+   KK ++F +PGA+T  CSQ H+P +     +LK+KGVD+V C+SVND + +  W E L   D +    D +G F K++  E+DLS     LG RS R++   ++G +K  N+E   + F  SGAE +L
Sbjct:   56 ATNFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLS--AALLGRRSHRWSAFVDDGKIKAFNVEVAPSDFKVSGAEVIL 195          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: Y4VD_RHISN (Putative peroxiredoxin y4vD OS=Rhizobium sp. (strain NGR234) GN=NGR_a01200 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = -2
Query:  242 TVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 607
            T  D  S K+ +LF++PGAFTPTCS + LP F     E    G++ V C+SVNDAFVM AW + LG+ ++V L+ DG+G FT+ +G  + ++   +G G+RS RYA +  + VV+    EEG
Sbjct:   33 TTEDYFSGKRVVLFSLPGAFTPTCSTQQLPDFERLYDEFGKVGIEAVYCLSVNDAFVMNAWGKALGL-EKVRLIPDGSGEFTRKMG--MLVAKDNLGFGMRSWRYAAVVNDSVVEQWFEEEG 151          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: MALF2_MALFU (Putative peroxiredoxin OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = -2
Query:  242 AISVGDKLPDATLSYFDSAGELQ---------TITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 682
            A + G+++PD  + Y     EL          T    D    KK ++ ++PGA+TP C Q+H+P  V++  ELK+KGVD V  I+ ND FVM AW       D+V+  +D +  F+KA+G  +DLS K    G R+ RYAL+ ++  +     +EG
Sbjct:    7 ATAKGNEIPDTLMGYIPWTPELDSGEVCGIPTTFKTRDEWKGKKVVIVSIPGAYTPICHQQHIPPLVKRVDELKAKGVDAVYVIASNDPFVMAAWGNFNNAKDKVVFATDIDLAFSKALGATIDLSAK--HFGERTARYALIIDDNKIVDFASDEG 160          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PMP20_SCHPO (Putative peroxiredoxin pmp20 OS=Schizosaccharomyces pombe GN=pmp20 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 63/165 (38.18%), Postives = 88/165 (53.33%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENL--GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLG-VRSRRYALLAENG-VVKVLNLEEGGAFTFSGAEDMLKAL 679
            ++VG  LP  TL       E +   V +  S  K I+  VPGAFTP CS + +PG++    +  +KG+  +  ++VND FV KAWK++   G    V  ++D NG FTKA     D S     LG +RS+RYA + ENG VVKV    E      S A+ +L +L
Sbjct:    2 VAVGSTLPKVTL------WENKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQ-VPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGL---LGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKVLSSL 156          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: AHP1_YEAST (Peroxiredoxin type-2 OS=Saccharomyces cerevisiae GN=AHP1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 58/147 (39.46%), Postives = 81/147 (55.10%), Query Frame = -2
Query:  197 QTITVSDLTS-NKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL-KSKGVDTVACISVNDAFVMKAWKENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVR-SRRYALLAENGVVKVLNLE--EGGAFTFSGAEDMLKAL 616
            QT+  S L S NKK I+   P AF+PTC+  H+PG++    EL K K VD V  ++V++ F  +AW ++LG+ D   +   SD    FTK+IG EL + D     GV  S R+A++ ENG+V     E   G   T S  E +L  L
Sbjct:   35 QTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-----GVYWSGRWAMVVENGIVTYAAKETNPGTDVTVSSVESVLAHL 176          
The following BLAST results are available for this feature:
BLAST of CF834730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PMP20_ASPFU6.997e-2338.73Putative peroxiredoxin pmp20 OS=Aspergillus fumiga... [more]
Y1621_SYNY39.138e-2343.33Putative peroxiredoxin sll1621 OS=Synechocystis sp... [more]
PMP20_LIPKO1.193e-2244.27Putative peroxisomal peroxiredoxin OS=Lipomyces ko... [more]
YRP2_RHIET3.473e-2245.90Putative peroxiredoxin in rpoN2 3'region OS=Rhizob... [more]
PRX2F_ORYSJ1.010e-2138.03Peroxiredoxin-2F, mitochondrial OS=Oryza sativa su... [more]
Y4VD_RHISN2.940e-2144.26Putative peroxiredoxin y4vD OS=Rhizobium sp. (stra... [more]
MALF2_MALFU1.117e-2035.90Putative peroxiredoxin OS=Malassezia furfur PE=1 S... [more]
PMP20_SCHPO8.851e-1838.18Putative peroxiredoxin pmp20 OS=Schizosaccharomyce... [more]
AHP1_YEAST4.857e-1639.46Peroxiredoxin type-2 OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834730 ID=CF834730; Name=CF834730; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTGGGATAAAAAATTAAATTGAGCAGGATAAAAAT
CCAAACAGCTCTGAAAATTCAAATGCACAAGGAGAAGTAGAAATTTCAAA
ACCCGAAACACGAGTTTTTAGTAACAAAGACACATTATTCAACACTCTAA
TGAAAGTTAAATTATTAAAAAAAAAAAAACTATCTCACCGAAATCACAGA
GCTTTGAGCATGTCCTCAGCTCCGCTGAAAGTAAAGGCGCCGCCCTCCTC
CAAATTGAGCACCTTAACGACGCCGTTTTCTGCCAAAAGGGCGTACCTCC
TGGACCTAACTCCCAATCCCATGGGCTTGTCACTCAAGTCGAGCTCACAG
CCAATAGCCTTAGTGAACACCCCGTTCCCATCAGACAACAAAAGCACTTC
ATCGTTGATTCCAAGATTCTCCTTCCAGGCCTTCATAACGAAGGCGTCGT
TCACGGAAATGCAGGCGACAGTGTCGACGCCTTTGGATTTCAACTCGGCG
GATTTCTCGACGAAGCCCGGGAGGTGTTTTTGGGAGCAGGTGGGGGTGAA
GGCGCCGGGGACGGCGAATAGGATTGCTTTTTTATTGGAGGTGAGGTCGG
AGACGGTGATGGTCTGGAGCTCGCCAGCGGAGTCGAAGTAGGAGAGGGTG
GCGTCGGGGAGCTTGTCGCCCACGGAAATGGCG
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