CF834731

Overview
NameCF834731
Unique NameCF834731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13382 contig Csv1_Contig13382:13..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 108/131 (82.44%), Postives = 118/131 (90.08%), Query Frame = -1
Query:  277 DAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALV-EKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKNMET 666
            DAGGIILLFQDD V GLQLLKD +WVDVPPM+HSIV+NLGDQLEVITNG+YKSV+HRV+AQT+GNRMSIASFYNPGSDAVI PAPALV E+EAV    YPKFVFEDYMKLY   KF+AKEPRFEA K+MET
Sbjct:  185 DAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAV--VAYPKFVFEDYMKLYVRHKFEAKEPRFEAFKSMET 313          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 108/131 (82.44%), Postives = 118/131 (90.08%), Query Frame = -1
Query:  277 DAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALV-EKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKNMET 666
            DAGGIILLFQDD V GLQLLKD +WVDVPPM+HSIV+NLGDQLEVITNG+YKSV+HRV+AQT+GNRMSIASFYNPGSDAVI PAPALV E+EAV    YPKFVFEDYMKLY   KF+AKEPRFEA K+MET
Sbjct:  185 DAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAV--VAYPKFVFEDYMKLYVRHKFEAKEPRFEAFKSMET 313          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.075e-55
Identity = 102/130 (78.46%), Postives = 118/130 (90.77%), Query Frame = -1
Query:  277 DAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKNMET 666
            DAGGIILLFQDD+VSGLQLLKD +W+DVPP+ HSIVINLGDQ+EVITNGKYKS++HRVIAQ++G RMSIASFYNPG DA I PAPAL+E+++  S  YPKF+F+DYMKLY+GLKFQAKEPRFEAMK  ET
Sbjct:  179 DAGGIILLFQDDKVSGLQLLKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQSDGTRMSIASFYNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDYMKLYSGLKFQAKEPRFEAMKARET 308          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.637e-53
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = -1
Query:  247 DAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKNMETIVNLGPIATV 666
            DAGGIILLFQDD+V+GLQLLKD  W+DVPP+ HSIVINLGDQLEVITNG+YKS++HRV+ Q EGNRMSIASFYNPGSDA I PA +L  KE      YP FVF+DYMKLYAG+KFQ KEPRFEAMKN   +  L P A V
Sbjct:  182 DAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEISPASSLACKET----EYPSFVFDDYMKLYAGVKFQPKEPRFEAMKNANAVTELNPTAAV 317          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 75/126 (59.52%), Postives = 96/126 (76.19%), Query Frame = -1
Query:  289 DAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMK 666
            DAGG+ILLFQDD+V GLQ+LKD +W+DV P+  +IVIN GDQ+EV++NG+YKS  HRV+A + GNR SIASFYNP   A I PA     +EA    +YPKF+F DYM +YA  K++ KEPRFEA++
Sbjct:  179 DAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKFLFGDYMDVYAKQKYEPKEPRFEAVR 304          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 46/118 (38.98%), Postives = 74/118 (62.71%), Query Frame = -1
Query:  313 DAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMKLYAGLKFQAK 666
            DA G+ LL Q +EV+GL + KD++WV + P+  + V+N+GD +E+++NG YKS+ HR +  T+  R+SIA+F++P     I P P LV++  V    Y    +EDY+   + +K   K
Sbjct:  230 DATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENGVK---YKTIDYEDYLIRSSNIKLDGK 344          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 41/93 (44.09%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  388 DAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAV 666
            D+ G+ +L Q ++V GLQ+ KD +WV V P+ ++ ++N+GD LE+ITNG Y+S+ HR +  +E  R+SIA+F+N G    + PA +LVE++ V
Sbjct:  235 DSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKV 327          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = -1
Query:  349 DEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDY 633
            +EV GLQ+ KDD+W+D   + +++VI++GDQ+E+++NGKYK+VLHR     +  RMS   F  P +D V+ P P LV+ E  N   Y    F+DY
Sbjct:  233 NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDE--NPPKYKAKKFKDY 325          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  343 ILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYPAPALVEKEAVNSQVYPKFVFEDYMK 651
            + +   D+V GLQ+  D++W  +PP  H+ V+N+GD    +TNG+YKS LHR +  +E  R + A F  P  + V+ P   LV       + YP F +  +++
Sbjct:  252 LTILHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELVNGVKSGERKYPDFTWSMFLE 354          
BLAST of CF834731 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14
Identity = 45/132 (34.09%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  295 DAGGIILLFQDDEVSGLQLLKDD--QWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYP------APALVEKEAVNSQVYPKFVFEDYMKLYAGLKFQAKEPRFEA 666
            D G I LL QD +V GLQ  KD+   W+ V P++ + V+NLGD    ++NG++K+  H+ +  +  +R+SIA+F NP  +A++YP        +++++    +++Y + + +D     A LK QAKE + +A
Sbjct:  222 DPGTITLLLQD-QVGGLQATKDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEAIVYPLKIREGEKSIMDEPITFAEMYRRKMSKDLE--LARLKKQAKEQQLQA 350          
The following BLAST results are available for this feature:
BLAST of CF834731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ACCO1_ORYSJ2.975e-5582.441-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSI2.975e-5582.441-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO2_MALDO5.075e-5578.461-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO1_BRAJU3.637e-5372.861-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO_MUSAC2.989e-3959.521-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
NCS1_COPJA3.436e-1938.98S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
SRG1_ARATH3.799e-1844.09Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_CITUN4.200e-1744.21Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
GAOX3_ARATH3.931e-1533.98Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
FL3H_PETHY1.144e-1434.09Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834731 ID=CF834731; Name=CF834731; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTTTTATGAGGCCAATATAATCTTATATAATTTCATCT
GAAACAGGAGGAATACAGTATTCCATTTGGTCACTTTCTACAATAAATAC
CTGAAACACCACGACCACCGTCGACTTTGACTCCACAAGAACTATGATCA
GTCCGAGCTTTCGGCTTATTTTAAAAACTATATATGTTCCACACTAGCCA
ACACAAACAACTCAGCTCTAACACCAAAGAGCCATAGGGGAACTCAAACA
GTTGCAATAGGACCCAGATTCACAATGGTCTCCATGTTCTTCATGGCTTC
AAACCTTGGCTCCTTGGCCTGAAACTTCAGCCCAGCATAGAGTTTCATGT
AATCCTCGAACACAAATTTCGGATAAACTTGGCTGTTCACAGCCTCCTTC
TCCACCAATGCTGGTGCCGGGTAGATCACAGCATCACTGCCTGGATTGTA
AAATGATGCTATGGACATCCTGTTACCCTCTGTTTGAGCAATCACGCGAT
GTAGCACACTCTTGTACTTGCCATTGGTTATCACCTCAAGTTGGTCACCG
AGGTTGATGACAATGGAGTGTTTCATGGGTGGAACATCAACCCATTGGTC
ATCTTTGAGCAGCTGGAGGCCACTGACTTCGTCATCTTGAAAGAGCAAGA
TGATGCCACCAGCATC
back to top