CF834742

Overview
NameCF834742
Unique NameCF834742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834742_ssr303 microsatellite CF834742_ssr303:303..320. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1247..1912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_HAHCH (Adenosylhomocysteinase OS=Hahella chejuensis (strain KCTC 2396) GN=ahcY PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  329 ETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK----STGKYEKKVY--VLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 640
            + N  +++L+EGRL+NLG ATGHPS +M  SF NQV+AQ+ L++ K       +  K +Y  VLPK LDE+V           +T+LT+ QA YI V  +GPYKP  Y+Y
Sbjct:  354 DQNDHLLLLSEGRLVNLGNATGHPSRIMDGSFANQVLAQMYLFERKFADLPADEKPKNLYVRVLPKQLDEEVARYMVQGFGGVITKLTQPQAKYIGVEVEGPYKPTDYKY 463          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_ACIAD (Adenosylhomocysteinase OS=Acinetobacter sp. (strain ADP1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  329 NSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEK------STGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 634
            N  +I+L+EGRL+NLG ATGHPS VM  SF NQV+ Q+ L++EK      S    + +V VLPK LDE+V           LT+LT  QADY+ V  +GP+K   Y+Y
Sbjct:  360 NDYLILLSEGRLVNLGNATGHPSRVMDGSFANQVLGQIHLFQEKFADLPASEKAAQIRVEVLPKKLDEEVAAAMVLGFGGVLTQLTSVQADYLGVPVEGPFKSDAYKY 467          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH3_PONAB (Putative adenosylhomocysteinase 3 OS=Pongo abelii GN=AHCYL2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D  ++P+    I++LAEGRL+NL C+T  P+FV+S + T Q +A +EL+     G+Y++ VY+LPK +DE V           LT LT EQA Y+ ++ +GP+KP +YRY
Sbjct:  400 QVDHVIWPD-GKRIVLLAEGRLLNLSCSTV-PTFVLSITATTQALALIELYNAPE-GRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY 508          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH3_MOUSE (Putative adenosylhomocysteinase 3 OS=Mus musculus GN=Ahcyl2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D  ++P+    I++LAEGRL+NL C+T  P+FV+S + T Q +A +EL+     G+Y++ VY+LPK +DE V           LT LT EQA Y+ ++ +GP+KP +YRY
Sbjct:  505 QVDHVIWPD-GKRIVLLAEGRLLNLSCSTV-PTFVLSITATTQALALIELYNAPE-GRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY 613          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH3_HUMAN (Putative adenosylhomocysteinase 3 OS=Homo sapiens GN=AHCYL2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D  ++P+    I++LAEGRL+NL C+T  P+FV+S + T Q +A +EL+     G+Y++ VY+LPK +DE V           LT LT EQA Y+ ++ +GP+KP +YRY
Sbjct:  503 QVDHVIWPD-GKRIVLLAEGRLLNLSCSTV-PTFVLSITATTQALALIELYNAPE-GRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY 611          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH2_MOUSE (Putative adenosylhomocysteinase 2 OS=Mus musculus GN=Ahcyl1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.099e-17
Identity = 46/112 (41.07%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D  ++P+    +++LAEGRL+NL C+T  P+FV+S + T Q +A +EL+     G+Y++ VY+LPK +DE V           LT LT +QA Y+ ++ +GP+KP +YRY
Sbjct:  422 QVDHVIWPD-GKRVVLLAEGRLLNLSCSTV-PTFVLSITATTQALALIELYNAPE-GRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYYRY 530          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH2_HUMAN (Putative adenosylhomocysteinase 2 OS=Homo sapiens GN=AHCYL1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.099e-17
Identity = 46/112 (41.07%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D  ++P+    +++LAEGRL+NL C+T  P+FV+S + T Q +A +EL+     G+Y++ VY+LPK +DE V           LT LT +QA Y+ ++ +GP+KP +YRY
Sbjct:  422 QVDHVIWPD-GKRVVLLAEGRLLNLSCSTV-PTFVLSITATTQALALIELYNAPE-GRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELTDDQAKYLGLNKNGPFKPNYYRY 530          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH2_DROME (Putative adenosylhomocysteinase 2 OS=Drosophila melanogaster GN=Ahcy89E PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  329 IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 625
            II+LAEGRL+NL C+T   SFV+S + + Q +A +EL+   + G+Y+  VY+LPK +DE V           LT LT EQ+ ++ ++  GP+K  +YRY
Sbjct:  397 IILLAEGRLVNLSCST-ISSFVVSVASSTQALALIELFS--APGRYKSDVYLLPKKMDEYVASLHLATFDAHLTELTDEQSKFMGLNKAGPFKANYYRY 492          
The following BLAST results are available for this feature:
BLAST of CF834742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
SAHH_HAHCH2.207e-1845.45Adenosylhomocysteinase OS=Hahella chejuensis (stra... [more]
SAHH_ACIAD2.440e-1747.22Adenosylhomocysteinase OS=Acinetobacter sp. (strai... [more]
SAHH3_PONAB2.440e-1742.86Putative adenosylhomocysteinase 3 OS=Pongo abelii ... [more]
SAHH3_MOUSE2.440e-1742.86Putative adenosylhomocysteinase 3 OS=Mus musculus ... [more]
SAHH3_HUMAN2.440e-1742.86Putative adenosylhomocysteinase 3 OS=Homo sapiens ... [more]
SAHH2_MOUSE7.099e-1741.07Putative adenosylhomocysteinase 2 OS=Mus musculus ... [more]
SAHH2_HUMAN7.099e-1741.07Putative adenosylhomocysteinase 2 OS=Homo sapiens ... [more]
SAHH2_DROME4.761e-1342.42Putative adenosylhomocysteinase 2 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834742 ID=CF834742; Name=CF834742; organism=Citrus sinensis; type=EST; length=666bp
GTTTTTTTTTCTTTTTTTTATAATCATTCATCAGTAAACAATAAGGATAA
CAAGATGCAGCAAAGCAAGCAAAACTTAAAACTGCATCAAATACAACATA
ATCCAACACGGCCCCATCCAAAACCTTATTCAAATCCCAAATGGTCTTCA
ATCAACTGAAACAAATCCGTTTCTTTCCTCCAACTTTCCCACCACCCAAA
CACACACTACTACCAAATTTAAACCTAACATCCTACTACAGATCATCATT
GAAAACAATCAAGCCGGCCAAATATTTTGTTTCTTTCCCTCAAAACATTC
ACTCTTCTTCTTCTTCTTCTTCCACTTAGTACCTGTAGTGAAGAGGCTTG
TAAGGACCATCGGCGGACACACTGATGTAGTCAGCCTGCTCCTTGGTGAG
CCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTGAAGAGCAGCAACCTTCT
CATCGAGGTGCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTG
CTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGA
ACAGGACATCACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGA
GACGTCCCTCAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACC
CACCTATCAGTTTGGG
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