CF834742

Overview
NameCF834742
Unique NameCF834742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834742_ssr303 microsatellite CF834742_ssr303:303..320. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1247..1912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_SOLUE (Adenosylhomocysteinase OS=Solibacter usitatus (strain Ellin6076) GN=ahcY PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 65/112 (58.04%), Postives = 75/112 (66.96%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D + FP   S I +LAEGRL+NLGCATGHPSFVMS SF NQ +AQL+LWK K T  Y+  VY LPK LDE+V           LT LT  QA+Y+ V  +GPYKP HYRY
Sbjct:  367 QVDMYTFPG-GSSIFILAEGRLVNLGCATGHPSFVMSNSFANQTLAQLDLWKNKDT--YKVGVYTLPKKLDEEVARLHLEKIGVKLTTLTPAQAEYLGVPVEGPYKPDHYRY 475          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_PROMA (Adenosylhomocysteinase OS=Prochlorococcus marinus GN=ahcY PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+K+  +  Y+  VYVLPKHLDE V           LT L+KEQADYI+V  +GPYK   YRY
Sbjct:  368 QVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFKKGDS--YQNNVYVLPKHLDEMVARLHLDKIGANLTELSKEQADYINVPIEGPYKSEQYRY 476          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_PLAF7 (Adenosylhomocysteinase OS=Plasmodium falciparum (isolate 3D7) GN=PFE1050w PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 63/112 (56.25%), Postives = 72/112 (64.29%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q DR   P  N  IIVLA GRL+NLGCATGHP+FVMS SF NQ  AQL+LW+ K T KYE KVY+LPKHLDEKV           LT L   Q  ++ V+  GP+K   YRY
Sbjct:  369 QVDRITLPNGNK-IIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_COXBU (Adenosylhomocysteinase OS=Coxiella burnetii GN=ahcY PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D+ +FP+    + VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPKHLDE+V           LT LT++QADYI V  +GP+K  HYRY
Sbjct:  330 QVDQVIFPD-GKRLTVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPKHLDEEVARLHLERVGGKLTTLTEKQADYIGVDPEGPFKSEHYRY 438          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_COXBN (Adenosylhomocysteinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ahcY PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D+ +FP+    + VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPKHLDE+V           LT LT++QADYI V  +GP+K  HYRY
Sbjct:  330 QVDQVIFPD-GKRLTVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPKHLDEEVARLHLERVGAKLTTLTEKQADYIGVDPEGPFKSEHYRY 438          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_COXB2 (Adenosylhomocysteinase OS=Coxiella burnetii (strain CbuG_Q212) GN=ahcY PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 65/112 (58.04%), Postives = 79/112 (70.54%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D+ +FP+    + VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPKHLDE+V           LT LT++QADYI V  +GP+K  HYRY
Sbjct:  330 QVDQVIFPD-GKRLTVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPKHLDEEVARLHLERVGGKLTTLTEKQADYIGVDPEGPFKSEHYRY 438          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_CAUCR (Adenosylhomocysteinase OS=Caulobacter crescentus GN=ahcY PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 65/106 (61.32%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  329 FPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 646
            FP+    +IVL+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW  K+  KYE +VY LPKHLDEKV           LT L K+QADYI V   GP+KP HYRY
Sbjct:  361 FPDGKK-LIVLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTNKA--KYENQVYTLPKHLDEKVAFLHLEKLGAKLTTLRKDQADYIGVPEAGPFKPDHYRY 463          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28
Identity = 64/112 (57.14%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D   FP+    II+L++GRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW      +Y+  VYVLPKHLDEKV           LT+LT++QADYI V  +GP+KP HYRY
Sbjct:  364 QVDLVEFPDGKQ-IIILSKGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTRSE--QYQNDVYVLPKHLDEKVAALHLEKLGVKLTKLTQKQADYIGVPVEGPFKPDHYRY 472          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_DESDG (Adenosylhomocysteinase OS=Desulfovibrio desulfuricans (strain G20) GN=ahcY PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28
Identity = 68/112 (60.71%), Postives = 76/112 (67.86%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQV+AQLEL    S    E+KVY+LPK LDE+V           LT LT EQA+YI V   GP+KP HYRY
Sbjct:  372 QVDKWTLKSGRS-IIVLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQLEL---ASNPDLERKVYILPKKLDEEVARLHLARLGAKLTTLTDEQAEYIGVDKTGPFKPDHYRY 479          
BLAST of CF834742 vs. ExPASy Swiss-Prot
Match: SAHH_DESAD (Adenosylhomocysteinase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=ahcY PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28
Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  329 QTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 664
            Q D+WV  E+   +IVLAEGRL+NLGCATGHPSFVMS SFTNQ +AQ++L K     +YE KV +L K LDE+V           L  L+KEQADYISV  +GPYKP HYRY
Sbjct:  366 QVDKWVM-ESGKSVIVLAEGRLVNLGCATGHPSFVMSNSFTNQALAQIDLAK----NEYEPKVMILSKKLDEEVARLHLERLGVELDVLSKEQADYISVDVEGPYKPDHYRY 472          
The following BLAST results are available for this feature:
BLAST of CF834742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
SAHH_SOLUE6.844e-2858.04Adenosylhomocysteinase OS=Solibacter usitatus (str... [more]
SAHH_PROMA6.844e-2859.82Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_PLAF76.844e-2856.25Adenosylhomocysteinase OS=Plasmodium falciparum (i... [more]
SAHH_COXBU6.844e-2858.04Adenosylhomocysteinase OS=Coxiella burnetii GN=ahc... [more]
SAHH_COXBN6.844e-2858.04Adenosylhomocysteinase OS=Coxiella burnetii (strai... [more]
SAHH_COXB26.844e-2858.04Adenosylhomocysteinase OS=Coxiella burnetii (strai... [more]
SAHH_CAUCR6.844e-2861.32Adenosylhomocysteinase OS=Caulobacter crescentus G... [more]
SAHH_SPHAL8.938e-2857.14Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]
SAHH_DESDG8.938e-2860.71Adenosylhomocysteinase OS=Desulfovibrio desulfuric... [more]
SAHH_DESAD8.938e-2858.93Adenosylhomocysteinase OS=Desulfovibrio salexigens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834742 ID=CF834742; Name=CF834742; organism=Citrus sinensis; type=EST; length=666bp
GTTTTTTTTTCTTTTTTTTATAATCATTCATCAGTAAACAATAAGGATAA
CAAGATGCAGCAAAGCAAGCAAAACTTAAAACTGCATCAAATACAACATA
ATCCAACACGGCCCCATCCAAAACCTTATTCAAATCCCAAATGGTCTTCA
ATCAACTGAAACAAATCCGTTTCTTTCCTCCAACTTTCCCACCACCCAAA
CACACACTACTACCAAATTTAAACCTAACATCCTACTACAGATCATCATT
GAAAACAATCAAGCCGGCCAAATATTTTGTTTCTTTCCCTCAAAACATTC
ACTCTTCTTCTTCTTCTTCTTCCACTTAGTACCTGTAGTGAAGAGGCTTG
TAAGGACCATCGGCGGACACACTGATGTAGTCAGCCTGCTCCTTGGTGAG
CCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTGAAGAGCAGCAACCTTCT
CATCGAGGTGCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTG
CTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGA
ACAGGACATCACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGA
GACGTCCCTCAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACC
CACCTATCAGTTTGGG
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