CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.308e-17
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = -2
Query:  329 KMYKIDDHVACA------VAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 745
            K+  +DD+V  A      V+G+ +DA I+IN ARV+ Q +     +P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y DD    +   ++L +K L + + S
Sbjct:   61 KICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQS 207          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+++ID HV  A AG ++DA  LI+ AR Q+Q     Y EP  VE L + + D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    W+           Q+ L+++Y + +  E  ++LAL+ L+ +++   L +  +++A +
Sbjct:   67 KIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIEDGEP-RLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALA-SVNEDGLDATGVDIATI 216          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = -2
Query:  332 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMD 745
            K++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L + + D  Q YTQ GG RPFGV+ +  G   N   +L+ +DPSG    WK           +  L++ Y + +  +E V LAL  L+   D
Sbjct:   68 KIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGG-IVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASVND 204          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = -2
Query:  218 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 745
            K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ    RPFG+S L  G+D +   +LY +DPSG Y  WK           +   +++Y D+    +   ++L +K L + + S       +ELA   +M   +    + SPE + K + +
Sbjct:   61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQS---GGKNIELA---VMRRDQPLKILTSPEEIEKYVAE 232          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = -2
Query:  317 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK--DDISREEAVQLALKVLSKTMDSTSLT 745
            K++ +DDHV  A++G+ +DA +L N  R +   Y Y Y+  M VE+LV  + D  Q +TQ  G RP+GV  L AG+D+  G  +Y + PSGN+  +K           ++ L++ ++  ++ + E+ +   L+ L +T+ +T  T
Sbjct:   62 KIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQ-LGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDT 205          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 58/179 (32.40%), Postives = 95/179 (53.07%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 745
            K+ +IDDH+  AV+G+ +DA  LI+ AR++AQ + + Y EP+ VE + Q++ D    + +         RPFGV+ L AG D+  G +L+ +DPSG +  +            QSIL + Y   ++  EA  LAL  L + M+   L S  +E+A   L+   K K+++     +  L+
Sbjct:   66 KIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDET-GPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEE-KLNSKNVEVA---LVTVEKKKFEIMDTAFIENLI 239          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV-FLMPSGKVKYQVCSPEALSKLL 745
            K+ KID H+A   AG+ +DA +L++ A+V+AQ +   +  P  VE + + L   KQ YTQ    RPFGVS L  G+D++   +L+ +DPSG Y  W               L+++        +A      V+     +TSL    +ELA + +  P   VK     PE L  LL
Sbjct:   60 KIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEKNTAAISRTPDAASAMKHVVRALFTATSLDPASIELAVLRYWQPIEMVK-----PETLEYLL 229          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16
Identity = 52/153 (33.99%), Postives = 79/153 (51.63%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTAR-VQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+  I  ++    +G+  D  +L++ AR V    Y   Y E  P   LVQ +    Q  TQ GG+RP+GVS L AGWD+  G  LY  DPSG+Y  WK           ++ L++ Y + +  E+AV +AL  L +T++   +  D +E+  V
Sbjct:   63 KISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQDVARVMQEATQSGGVRPYGVSLLIAGWDEG-GPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEG-EMNGDTIEIGIV 213          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = -2
Query:  269 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 745
            K+  +D+HV  A AG+ +DA I+IN A+V+ Q +    ++P+ +E + + +   KQ YTQ  G RPFG+S L  G+D +    L+ ++PSG +  +K           +   ++ Y+++    E  AV+LA++ L +   S     + LE+A   +M +GK
Sbjct:   63 KICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEVAQS---GQNNLEVA---IMENGK 217          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.353e-16
Identity = 47/152 (30.92%), Postives = 84/152 (55.26%), Query Frame = -2
Query:  296 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELA 745
            K++K+DDH+  A+AG+ +D  +L    R ++  +++ Y+ P+PV +LV  L D  Q  TQ    RP+GV  L  G D++ G  LY + PSGNY  ++           ++ L++ ++   D SRE+ ++ A+  + +T+   +L S    +A
Sbjct:   62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVA 212          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSA7_RAT2.308e-1734.01Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSMA2_HALMA3.014e-1734.87Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSMA1_HALMA5.142e-1738.41Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA7_CHICK5.142e-1730.90Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA1_DICDI6.715e-1732.41Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA5_ENTHI1.145e-1632.40Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA73_DROVI3.333e-1632.57Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSA2_NEUCR3.333e-1633.99Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA71_DROME4.353e-1631.06Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA1A_ARATH4.353e-1630.92Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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