CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:322..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.013e-29
Identity = 68/174 (39.08%), Postives = 110/174 (63.22%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 745
            K+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+D+++ EEA++LA+  LSK M+  S      E  EV ++   + K++  +PE ++K L
Sbjct:   68 KIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPS-----PESIEVAVISVKEKKFKKITPEEVAKCL 234          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.629e-29
Identity = 67/174 (38.51%), Postives = 109/174 (62.64%), Query Frame = -2
Query:  224 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 745
            K+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I +  Y+DD++ +EA++LA+  L+KTM+  S  ++ +E+A + +      K++  S E + K L
Sbjct:   68 KIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAG--VNDKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPS--AENIEVAVITVKDK---KFRKLSKEEIEKFL 234          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.648e-29
Identity = 64/154 (41.56%), Postives = 99/154 (64.29%), Query Frame = -2
Query:  284 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFL 745
            K+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ Y DDI  E A++LA+  L+KT++  S   + +E+A + L
Sbjct:   68 KIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEPS--PESIEVAYITL 217          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 61/152 (40.13%), Postives = 101/152 (66.45%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+DDI +++A++LA+  L+KT++    T++ +E+A +
Sbjct:   68 KIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 61/152 (40.13%), Postives = 101/152 (66.45%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+DDI +++A++LA+  L+KT++    T++ +E+A +
Sbjct:   68 KIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28
Identity = 66/176 (37.50%), Postives = 106/176 (60.23%), Query Frame = -2
Query:  218 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 745
            K+++IDDHVA A +G+++DA +LI+ AR++AQ Y   Y E + +E L + +CD KQ YTQ GG+RPFGVS L AG DKN   +L+ +DPSG    +K             +L+++Y+DDI+ +E ++LA+  L+K  +       K E  +V ++     +++    E + KL+ K
Sbjct:   67 KIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEA-RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDI-----KPENVDVCIITVKDAQFKKIPVEEIKKLIEK 236          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.104e-27
Identity = 61/152 (40.13%), Postives = 97/152 (63.82%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  W+            +I +  Y DD+  E A++LA+  L+KT++  S   + +E+A +
Sbjct:   68 KIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNDKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPS--PESIEVAYI 215          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.213e-27
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+Y+ID H+  A AG+++DA +L+  AR++AQ Y Y Y EP+ V+ LV+++CD KQ YTQ GG+RPFG + L AG D   G +L+ +DPSG     K             + +++Y++D++ +EA++LA++ L +       T+D LE+A V
Sbjct:   68 KVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTK-GCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEA-SREETTADNLEIAVV 217          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.595e-26
Identity = 67/179 (37.43%), Postives = 107/179 (59.78%), Query Frame = -2
Query:  209 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGV 745
            K+Y ID+HVA + +G+++DA ILI+ AR  A  + + Y EP+ VE L +++C+ KQ YTQFGG RPFGV+ L AG D+ +G +LY +DPSG Y G+               L+++YK D+   E ++LALK L+  ++ T   + ++  A +      + K +  S + ++ LL K G+
Sbjct:   67 KIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDR-HGARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVEITDSANVEVAYATI-----EEKKMRKMSQDEVASLLTKLGL 239          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 60/150 (40.00%), Postives = 95/150 (63.33%), Query Frame = -2
Query:  299 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 745
            K++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSMA_THESM2.013e-2939.08Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_PYRAB2.629e-2938.51Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_THEGJ7.648e-2941.56Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_THEK11.305e-2840.13Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO1.305e-2840.13Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_METJA8.456e-2837.50Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_THEON1.104e-2740.13Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METKA3.213e-2739.47Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_PYRAE1.595e-2637.43Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA_SULIY3.007e-2540.00Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
back to top