CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:322..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 53/141 (37.59%), Postives = 82/141 (58.16%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDS 745
            K+  +DDHV  A AG+ +DA ++IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y +D   S  EA++LA+K L + + S
Sbjct:   63 KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQS 203          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 61/185 (32.97%), Postives = 101/185 (54.59%), Query Frame = -2
Query:  203 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 745
            K+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D     +L+ +DPSG    +K             + + DYK+D++ E A+ L +  L K  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:   65 KIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEG-KFDAGTLEVGVVSLQDK---KFRKLEPEEVGNYVQQILEKHKETE 244          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.494e-21
Identity = 55/155 (35.48%), Postives = 90/155 (58.06%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+ +IDDH+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  D+S +EA  +A+ +L + M+   +T + +++A+V
Sbjct:   66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 57/160 (35.62%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  269 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 745
            K+  +D+HV  A AG+ +DA ILI+ ARV+AQ +     +P+ +E L + +   +Q YTQ GG+RPFGVS L AG+D      ++Y ++P+G Y  WK           +  L++++K+ +SR+E + LA   +S  ++     S  +ELA   +M  GK
Sbjct:   62 KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLA---VSSLLEVVQTASGNIELA---IMDPGK 215          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 55/155 (35.48%), Postives = 90/155 (58.06%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K+ +IDDH+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  DI+ +EA  +A+ +L + M+   +T + +++A+V
Sbjct:   66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.666e-21
Identity = 52/141 (36.88%), Postives = 82/141 (58.16%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDS 745
            K+  +D+HV  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+   S  +A++LA+K L + + S
Sbjct:   63 KICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQS 203          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 46/137 (33.58%), Postives = 82/137 (59.85%), Query Frame = -2
Query:  335 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 745
            K++ +DDHV C+ AG+ SD  ILI+ AR QA ++   Y EP+ ++ L + + D KQ YTQ GG+RPFGV+ +  G D+    +L M++PSG +  +                +++Y++D++ ++ + L ++ L+ T+
Sbjct:   68 KVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTL 204          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 59/181 (32.60%), Postives = 100/181 (55.25%), Query Frame = -2
Query:  215 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALS----KLLVKH 745
            K+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K  +     +  LE+  V L      K++   PE +     ++L KH
Sbjct:   67 KIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEG-KFDAGTLEVGVVSLEDK---KFRKLGPEEVENYVHQILEKH 242          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDI--SREEAVQLALKVLSKTMDS 745
            K+  +DDHV  A AG+ +DA ++I+ ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y +D   + +EA++LA+K L + + S
Sbjct:   63 KICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQS 203          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 49/140 (35.00%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 745
            K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK+  S +E ++LA++ L + ++S
Sbjct:   62 KIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-SGQETIKLAIRALLEVVES 200          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSA7L_MACFA1.545e-2137.59Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSMA_METTE2.017e-2132.97Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSA5A_ARATH4.494e-2135.48Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA7_SCHPO5.869e-2135.63Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA5B_ARATH5.869e-2135.48Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA7_CARAU7.666e-2136.88Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSMA_SULTO1.001e-2033.58Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_METMA1.001e-2032.60Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSA7L_MOUSE1.001e-2036.17Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7B_ARATH1.001e-2035.00Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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