CF834747

Overview
NameCF834747
Unique NameCF834747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:322..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.466e-19
Identity = 59/152 (38.82%), Postives = 88/152 (57.89%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K++K DDHV  A AG ++DA  LI+ AR QAQ     Y EP+ +E L +++ D  Q YTQ GG RPFGV+ L  G +     +LY +DPSG    WK           Q  L+++Y +++S +E V LAL+ ++ + D   LT+  +++A V
Sbjct:   68 KIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDG-SPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDD-ELTAAGVDVATV 217          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  347 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVL 745
            K++KID+H+  A +G++ DA  L++ ARV++Q    +Y E + VE L + LCD  Q YTQFGG RP+G + L AG      F+L+ +DPSG    +K             + +++Y  + S  +A+ L LK L
Sbjct:   67 KIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDGQ-FRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLKAL 198          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 49/141 (34.75%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 745
            K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+    +   ++L +K L + + S
Sbjct:   61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 49/141 (34.75%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 745
            K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+    +   ++L +K L + + S
Sbjct:   61 KICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 58/186 (31.18%), Postives = 95/186 (51.08%), Query Frame = -2
Query:  188 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAET 745
            K++K+DD +  A AG ++DA  L++ AR  AQR    Y EP+ VE L +++ D  Q  TQ GG RP+G S L  G +   G +L+ +DPSG    WK           Q+ L+  Y +D+S E+ + LA++ L           +++E  E+ L+   +  Y++   E +++L         + ET
Sbjct:   67 KLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVENGSG-RLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEAL-------VAADEEIESDELNLVTVSEAGYEIVDEETIAELFADATADDESDET 244          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 49/140 (35.00%), Postives = 82/140 (58.57%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 745
            K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK + S +E ++LA++ L + ++S
Sbjct:   62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRALLEVVES 200          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 49/140 (35.00%), Postives = 82/140 (58.57%), Query Frame = -2
Query:  329 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 745
            K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK + S +E ++LA++ L + ++S
Sbjct:   62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRALLEVVES 200          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 58/152 (38.16%), Postives = 83/152 (54.61%), Query Frame = -2
Query:  290 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 745
            K++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L +++ D  Q YTQ GG RPFGV+ +  G +     +LY +DPSG    W+           Q  L++ Y + +  E  + LAL+ L+   D  SLT + + LA V
Sbjct:   68 KIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIEDGEP-RLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDD-SLTPEGIGLATV 217          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = -2
Query:  341 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSK 745
            K++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    WK           Q  L+ +Y   +S ++ + LAL+ L++
Sbjct:   68 KLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CF834747 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = -2
Query:  341 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSK 745
            K++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    WK           Q  L+ +Y   +S ++ + LAL+ L++
Sbjct:   68 KLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
The following BLAST results are available for this feature:
BLAST of CF834747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
PSMA_HALWD2.466e-1938.82Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA_METPE3.221e-1936.84Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSA7_HUMAN4.206e-1934.75Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7_BOVIN4.206e-1934.75Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSMA2_HALVO5.494e-1931.18Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA7B_ORYSJ5.494e-1935.00Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI5.494e-1935.00Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSMA_NATPD9.371e-1938.16Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_HALSA1.224e-1839.26Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.224e-1839.26Proteasome subunit alpha OS=Halobacterium salinaru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834747 ID=CF834747; Name=CF834747; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTAGGTAAACTGCATCCAACATCATAACATCTGCCAT
TACCAAGCTTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTG
GGCAAAAAGCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATT
AAGTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCA
GGTTGCGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGA
GCAAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTA
ATTCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGC
ACCTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTA
ATCTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAG
CAGCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGG
AAGCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAACGG
GCGGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATT
GAACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGT
TGGGCTTGGACCCTGGCAGTGTTGATTAGGATGTTCGCATCAGACATTAT
TCCAGCTACGGCACAAGCAACGTGATCATCAATCTTGTACATCTTC
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