CF834748

Overview
NameCF834748
Unique NameCF834748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:608..1328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_SCHPO (Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 35/122 (28.69%), Postives = 66/122 (54.10%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 497
            ++  +M+ +APNL+ ++G  V A+L+  AG L+ L+K PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D+    P+   G+  R ++ +++
Sbjct:  287 YLVQKMNVVAPNLAELIGEMVGARLISHAGSLTNLSKCPASTVQILGAEKALFRALKTRGNTPKYGIIYHSSFIGKAGAKNKGRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERL 408          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: Y694_METJA (Uncharacterized NOP5 family protein MJ0694 OS=Methanocaldococcus jannaschii GN=MJ0694 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEK 503
            ++E  M+  APN++ + G ++ A+L+G AGGL  LAKMPA  +Q+LGA+K   A         + G +    + Q +P   R +  R LA K  +AAR D   GD          E+++K++E+
Sbjct:  238 YLEKLMNEEAPNITKLAGVSLGARLIGLAGGLEKLAKMPASTIQVLGAEKALFAHLRMGVEPPKHGIIYNHPLIQGSPHWQRGKIARALACKLAIAARADYV-GD---YIADELLEKLNKRVEE 357          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_VANPO (Nucleolar protein 58 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 503
            ++ SRM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  275 YLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLEARAKVENRLSQ 400          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_KLULA (Nucleolar protein 58 OS=Kluyveromyces lactis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 503
            ++ SRM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  275 YLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVESRLSQ 400          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_MOUSE (Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 497
            ++++RM  IAPN++ +VG  V A+L+  AG L  LAK  A  VQ+LGA+K       +     + G +    +   + P  + +  R+LAAK+ LA R D+   D S   G   R ++  ++
Sbjct:  274 YLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQSSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGIENRAKLEARL 395          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_ASPCL (Nucleolar protein 58 OS=Aspergillus clavatus GN=nop58 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 41/141 (29.08%), Postives = 67/141 (47.52%), Query Frame = 3
Query:   12 VSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 434
            V   A  + G  + +D L+                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  237 VKAAADRSMGTEISQDDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGIRVDA 377          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP56_DICDI (Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 39/123 (31.71%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE 500
            ++  +M  IAPNLSA+VG  + AKL+  AG L++LAK PA  VQ+LGA+K             + G +       S+    + R  R L+ K ++A R+D    +P+   G + ++++  +I+
Sbjct:  283 YLAKKMQDIAPNLSALVGDRIGAKLISRAGSLTSLAKYPASTVQILGAEKALFRAMKVRGKTPKYGIIFNASAV-SSETKNKGRIARCLSNKISIATRIDCFSDNPTAKFGVALKQQVADRIK 404          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  135 VESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 497
            ++++M+ IAPNL+A+VG  V A+L+   G L  L+K+P   +Q+LGA+K       T  +  + G +    + +   P  + +  R LAAKS LA R D+       T G   R ++  ++
Sbjct:  245 LKNKMNKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYGLIYHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARL 365          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_NEOFI (Nucleolar protein 58 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=nop58 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 434
            ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  277 YLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDA 377          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_ASPFU (Nucleolar protein 58 OS=Aspergillus fumigatus GN=nop58 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 434
            ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K       T     + G +    +        + +  R+LAAK++L  RVD+
Sbjct:  277 YLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDA 377          
The following BLAST results are available for this feature:
BLAST of CF834748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NOP56_SCHPO2.306e-1128.69Nucleolar protein 56 OS=Schizosaccharomyces pombe ... [more]
Y694_METJA3.011e-1133.87Uncharacterized NOP5 family protein MJ0694 OS=Meth... [more]
NOP58_VANPO3.933e-1131.75Nucleolar protein 58 OS=Vanderwaltozyma polyspora ... [more]
NOP58_KLULA3.933e-1131.75Nucleolar protein 58 OS=Kluyveromyces lactis GN=NO... [more]
NOP58_MOUSE5.136e-1131.97Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1... [more]
NOP58_ASPCL5.136e-1129.08Nucleolar protein 58 OS=Aspergillus clavatus GN=no... [more]
NOP56_DICDI5.136e-1131.71Nucleolar protein 56 OS=Dictyostelium discoideum G... [more]
NOP5C_ARATH6.708e-1131.40Putative nucleolar protein 5-3 OS=Arabidopsis thal... [more]
NOP58_NEOFI6.708e-1135.64Nucleolar protein 58 OS=Neosartorya fischeri (stra... [more]
NOP58_ASPFU6.708e-1135.64Nucleolar protein 58 OS=Aspergillus fumigatus GN=n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834748 ID=CF834748; Name=CF834748; organism=Citrus sinensis; type=EST; length=721bp
TTATCATGGTGGTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTT
CCAGAAGATGTCCTTCAAAAGACAATTGATGCATGTGATCGAGCTCTTGC
ACTTGATGCAGCAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGA
GCTATATTGCGCCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCA
AAACTCATGGGAACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGC
TTGTAACGTTCAGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTTTT
CTACTGCAACATCTCAATTCCGTGTAGGTTATCTTGAGCAGACAGAGATA
TTTCAAAGTACACCTCCACCTCTAAGGATGCGTGCCTGCCGACTCTTGGC
TGCAAAATCAACACTTGCAGCACGTGTTGATTCTACTAGAGGAGATCCTT
CTGGAACTGCTGGGAGGTCATTCAGAGAAGAGATTCACAAGAAAATTGAA
AAGTGGCAAGAGCCTCCTCCTGCAAAGCAACCTAAACCTCTTCCAGTTCC
TGATTCTGAGCCTAAAAAGAAGAGGGGTGGTCGACGGTTAAGGAAGATGA
AAGAAAGATATGCTGTAACAGATATGAGAAAGCTGGCTAATAGAATGCTA
TTTGGTGTACCTGAAGAAAGTTCCTTAGGTGATGGATTGGGAGAGGGTTA
TGGAATGCTTGGTCAAGCTGG
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