CF834748

Overview
NameCF834748
Unique NameCF834748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:608..1328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_YEAST (Nucleolar protein 58 OS=Saccharomyces cerevisiae GN=NOP58 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 503
            ++ +RM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  275 YLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQ 400          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_YEAS7 (Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTR--GDPSGTAGRSFREEIHKKIEK 503
            ++ +RM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K       T     + G L    +        + +  R+LAAK+ ++ R D+     D SG  G   R ++  ++ +
Sbjct:  275 YLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQ 400          
BLAST of CF834748 vs. ExPASy Swiss-Prot
Match: NOP58_DICDI (Nucleolar protein 58 OS=Dictyostelium discoideum GN=nop58 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  132 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 434
            +++SRM  IAPNL+ +VG  V A+L+  AG L  LAK PA  +Q+LGA+K       T  +  + G +   +I        + +  R+LAAK+ L+AR D+
Sbjct:  276 YLKSRMEAIAPNLTILVGEIVGARLICRAGSLMNLAKYPASTIQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMSRVLAAKAALSARFDA 376          
The following BLAST results are available for this feature:
BLAST of CF834748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NOP58_YEAST8.761e-1130.95Nucleolar protein 58 OS=Saccharomyces cerevisiae G... [more]
NOP58_YEAS78.761e-1130.95Nucleolar protein 58 OS=Saccharomyces cerevisiae (... [more]
NOP58_DICDI8.761e-1137.62Nucleolar protein 58 OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834748 ID=CF834748; Name=CF834748; organism=Citrus sinensis; type=EST; length=721bp
TTATCATGGTGGTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTT
CCAGAAGATGTCCTTCAAAAGACAATTGATGCATGTGATCGAGCTCTTGC
ACTTGATGCAGCAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGA
GCTATATTGCGCCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCA
AAACTCATGGGAACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGC
TTGTAACGTTCAGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTTTT
CTACTGCAACATCTCAATTCCGTGTAGGTTATCTTGAGCAGACAGAGATA
TTTCAAAGTACACCTCCACCTCTAAGGATGCGTGCCTGCCGACTCTTGGC
TGCAAAATCAACACTTGCAGCACGTGTTGATTCTACTAGAGGAGATCCTT
CTGGAACTGCTGGGAGGTCATTCAGAGAAGAGATTCACAAGAAAATTGAA
AAGTGGCAAGAGCCTCCTCCTGCAAAGCAACCTAAACCTCTTCCAGTTCC
TGATTCTGAGCCTAAAAAGAAGAGGGGTGGTCGACGGTTAAGGAAGATGA
AAGAAAGATATGCTGTAACAGATATGAGAAAGCTGGCTAATAGAATGCTA
TTTGGTGTACCTGAAGAAAGTTCCTTAGGTGATGGATTGGGAGAGGGTTA
TGGAATGCTTGGTCAAGCTGG
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