CF834749

Overview
NameCF834749
Unique NameCF834749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:88..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.169e-58
Identity = 109/117 (93.16%), Postives = 113/117 (96.58%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK VEKKDP
Sbjct:  318 KDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.647e-57
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRFAVR MRQTVAVGVIK VEKKDP
Sbjct:  318 KDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.764e-56
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  318 KDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.764e-56
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = -1 
Query:  356 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 706
            KDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  318 KDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.147e-47
Identity = 89/116 (76.72%), Postives = 104/116 (89.66%), Query Frame = -1 
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK V KKD
Sbjct:  318 KNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKD 433
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = -1 
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DPA+EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  328 KNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 87/116 (75.00%), Postives = 105/116 (90.52%), Query Frame = -1 
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  328 KNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 87/116 (75.00%), Postives = 105/116 (90.52%), Query Frame = -1 
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  328 KNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 91/115 (79.13%), Postives = 101/115 (87.83%), Query Frame = -1 
Query:  362 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 706
            K+DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK VEKK
Sbjct:  330 KNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444
[Close]
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 89/115 (77.39%), Postives = 102/115 (88.70%), Query Frame = -1 
Query:  362 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 706
            K+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  330 KNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444
The following BLAST results are available for this feature:
BLAST of CF834749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A_WHEAT7.169e-5893.16Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A1_DAUCA4.647e-5791.45Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU8.764e-5688.89Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU8.764e-5688.89Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_TRYBB1.147e-4776.72Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ABSGL2.556e-4775.86Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A2_RHIRA3.338e-4775.00Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA3.338e-4775.00Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A0_XENLA7.436e-4779.13Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A3_XENLA1.268e-4677.39Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834749 ID=CF834749; Name=CF834749; organism=Citrus sinensis; type=EST; length=706bp
CTCGAGTTTTCTTTTTTTTTTTTTTGAACCATCAAAAACAGTCGCCCATT
CTCTCAGGGCAAAATTTAATACAACACCTACAAAATATATGAGCACCGAC
TAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAACAAAATGTTTG
ACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACTCTGATATAAA
ACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACG
ACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAGATAGAT
CCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCA
CCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGT
CTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGA
AGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCAGCA
TCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCG
CCTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGG
TGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGG
TTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATC
ATCCTT
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