CF834749

Overview
NameCF834749
Unique NameCF834749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:88..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 83/116 (71.55%), Postives = 100/116 (86.21%), Query Frame = -1
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSELV KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  327 KNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSD 442          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 88/115 (76.52%), Postives = 99/115 (86.09%), Query Frame = -1
Query:  362 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 706
            K+DP  EAA FT+QVII+NHPGQI  GYAPV DCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  330 KNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 84/114 (73.68%), Postives = 101/114 (88.60%), Query Frame = -1
Query:  365 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 706
            K+DP   AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  329 KNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 85/116 (73.28%), Postives = 100/116 (86.21%), Query Frame = -1
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K DP +EAA+F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  L  KIDRR+GK LE+ PKF+K+GDA +VKM+P+K M VE F+DYPPLGRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  327 KCDPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 82/114 (71.93%), Postives = 102/114 (89.47%), Query Frame = -1
Query:  365 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 706
            K+DP     +F +QVI++NHPGQ+GNGYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E +PKF+K+GDA +VKMIP+KPM VE+F+D+PPLGRFAVRDMRQTVAVGVIK+VEK
Sbjct:  329 KNDPPAGCDSFNAQVIVLNHPGQVGNGYAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 82/116 (70.69%), Postives = 100/116 (86.21%), Query Frame = -1
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  329 KNDPPKGCESFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSD 444          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45
Identity = 83/116 (71.55%), Postives = 100/116 (86.21%), Query Frame = -1
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DP +   +F +QVI++NHPGQI  GY+PVLDCHT+HIA KF  LV KIDRR+GK+LE+ PKF+K+GDA +VKM+PTKPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  328 KNDPPKGCDSFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45
Identity = 86/116 (74.14%), Postives = 103/116 (88.79%), Query Frame = -1
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRS K +E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  328 KNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 442          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45
Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = -1
Query:  359 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 706
            K+DPA+E+ NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRR+GK  E  PKFLK+GDAG+V++IPTKP  VE+F+DY PLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  331 KNDPAKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDD 446          
BLAST of CF834749 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.187e-44
Identity = 83/114 (72.81%), Postives = 101/114 (88.60%), Query Frame = -1
Query:  365 KDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 706
            K+DP   AA+F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E+ PKF+K+GDA +VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  329 KNDPPLGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
The following BLAST results are available for this feature:
BLAST of CF834749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A_AURPU5.329e-4571.55Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A1_HORSE5.329e-4576.52Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A_SORMA6.960e-4573.68Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PUCGR6.960e-4573.28Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_ASPOR6.960e-4571.93Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_AJECG6.960e-4570.69Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_CANAL9.090e-4571.55Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A3_RHIRA9.090e-4574.14Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A3_OSCTI9.090e-4572.41Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_PODCU1.187e-4472.81Elongation factor 1-alpha OS=Podospora curvicolla ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834749 ID=CF834749; Name=CF834749; organism=Citrus sinensis; type=EST; length=706bp
CTCGAGTTTTCTTTTTTTTTTTTTTGAACCATCAAAAACAGTCGCCCATT
CTCTCAGGGCAAAATTTAATACAACACCTACAAAATATATGAGCACCGAC
TAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAACAAAATGTTTG
ACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACTCTGATATAAA
ACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACG
ACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAGATAGAT
CCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCA
CCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGT
CTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGA
AGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCAGCA
TCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCG
CCTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGG
TGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGG
TTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATC
ATCCTT
back to top