CF834763

Overview
NameCF834763
Unique NameCF834763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834763_ssr78 microsatellite CF834763_ssr78:78..95. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834763_ssr158 microsatellite CF834763_ssr158:158..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2397 contig Csv1_Contig2397:104..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP-----SLSRGIFPT------------RQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+DLW PF  FP     S S  IFP+               +I+W ETP AH+FKA  PGL  ++V V VD+  +LQIS +                   GKF  RF+LP NA  +Q+KASM  G+LTVTV KE + +P +V+ ++I+G
Sbjct:   12 PFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKP-DVKSIQISG 161          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 59/144 (40.97%), Postives = 80/144 (55.56%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP--SLSRGIFPTRQT--------QINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+DLW PF  FP  S S  +FP   +        +I+W ETP AH+FKA  PGL  ++V V V++  +LQIS +                   GKF  RF+LP N   +Q+KASM  G+LTVTV KE   +P +V+ ++ITG
Sbjct:   12 PFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKP-DVKSIQITG 154          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 61/137 (44.53%), Postives = 78/137 (56.93%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP---SLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P SID++ PF +     S S        T+I+W ETP AH+FKA  PGL  ++V V V+EDR+LQIS +                   GKF  RF+LP NA  DQVKASM  G+LTVTV KE    P +V+ +EI+G
Sbjct:   19 PFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNP-DVKSIEISG 154          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.444e-19
Identity = 57/148 (38.51%), Postives = 82/148 (55.41%), Query Frame = -3
Query:  221 GPFQNFLEEFPLSIDLWGPFSDF----PSLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 598
            GP  N  +  P S+D+W PF DF     S+S        T+++W ET  AH+ KA  PGL  ++V V +++DR+LQIS +                   GKF  RF+LP NA  +QVKA M  G+LTVT+ KE  ++  +V+ +EI+G
Sbjct:   10 GPRSNVFD--PFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKE-EVKKSDVKPIEISG 154          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFPSLSRGIFPTR---------QTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF D+P ++     +           T I+W ETP+AH+FKA  PGL  ++V V V+E ++LQIS +                   GKF  RF+LP NA  D+VKA M  G+LTVTV K    +P+ V+ + I+G
Sbjct:   18 PFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPE-VKSIHISG 159          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFPSLSRGIFPTRQ-------TQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF DFP ++       +       T I+W ETP+AH+FKA  PGL  ++V V ++E ++LQIS +                   GKF  RF+LP NA  D+VKA+M  G++TVTV K + ++   V+ ++I+G
Sbjct:   18 PFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPK-VEIKKPEVKAIDISG 157          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP----SLSRG-IFPT------------RQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+DLW PF  FP    S S G IFP+               +I+W ETP AH+FKA  PGL  ++V V V++  +LQIS +                   GKF  RF+LP N   +Q+KASM  G+LTVTV KE   +P +V+ +++TG
Sbjct:   12 PFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKP-DVKSIQVTG 161          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 53/136 (38.97%), Postives = 77/136 (56.62%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFPS--LSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF +  S  LSR        +++W ETP AH+FKA  PGL  ++V V ++ED +L+IS +                   G+FT RF+LP N   DQVKA+M  G+LTVTV K    +  +V+ ++I+G
Sbjct:   19 PFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPK-AETKKADVKSIQISG 153          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 57/149 (38.26%), Postives = 78/149 (52.35%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP-------SLSRGIFPTRQT--------QINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+DLW P   FP       S S  +FP   +        +I+W ETP  H+FKA  PGL  ++V V VD+  +LQIS +                   GKF  RF+LP N   +Q+KASM  G+LTVTV KE   +P +V+ ++I+G
Sbjct:   12 PFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKP-DVKSIQISG 159          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = -3
Query:  221 PLSIDLWGPFSDF--PSLS----RGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF  F  P L+    + +      +++W ETP AH+FKA  PGL  ++V V V++  +LQIS +                   GKF  RF+LP NA  ++VKASM  G+L+VTV K    +P+ V+ V+I+G
Sbjct:   18 PFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPE-VKSVDISG 156          
The following BLAST results are available for this feature:
BLAST of CF834763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HS17A_ORYSJ1.696e-1940.4017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ2.215e-1940.9717.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_SOLPE2.893e-1944.5317.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP15_SOYBN6.444e-1938.5117.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA1.099e-1838.4618.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_DAUCA1.875e-1837.5917.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ORYSJ2.449e-1839.7418.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17B_ARATH9.305e-1838.9717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS177_ORYSJ9.305e-1838.2617.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP17_ARATH6.031e-1737.8617.4 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834763 ID=CF834763; Name=CF834763; organism=Citrus sinensis; type=EST; length=609bp
TTTTTTTTTTTTTTTTTATTTGCAATGATAATTGATATTGATAATTTGAG
TTTTACAATATCCAAAATTACAACATAACACACACACACACACACATCTC
GAATGCTCTGCACAGTACTACACAAGTCTACACTTCAAACCAAACACAAG
CTCACATTATATATATATATATATATATATATAGGCGCAATAATATCACA
AACCCAGAAATTTAGTCAGACCCAGTAATTTCAACAACCCTAACATTTTG
TGGCTGCAGTGACATCTCCTTAGAGACTGTAACAGTGAGCAACCCATAAT
TCATGGAAGCCTTGACCTGATCGGTAATAGCATTAGCAGGCAGCTTAAAC
CTGCTCGTGAACTTGCCATCATCGGTGCTTATTTGGAGCATTCTGTCTTC
ATCGACGAACACTATCACTTGGTCTCCCGTAAGCCCTGGAAAGTAAGCTT
TGAACAAGTGGGCTCTCGGGGTCTCACTCCAGTTGATCTGGGTTTGACGG
GTTGGAAAAATCCCCCGGGAAAGTGAAGGAAAATCACTGAATGGGCCCCA
AAGGTCAATAGATAAGGGGAATTCTTCTAGAAAGTTCTGGAAGGGACCCC
ATACTTCTG
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