CF834763

Overview
NameCF834763
Unique NameCF834763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834763_ssr78 microsatellite CF834763_ssr78:78..95. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834763_ssr158 microsatellite CF834763_ssr158:158..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2397 contig Csv1_Contig2397:104..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = -3
Query:  215 PLSIDLWGPFSDF---------PSLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITGSD 568
            P S DLW PF  F          S +R +      +++W ETP AH+FKA  PGL  ++V V V++  +LQIS +                   GKF  RF+LP NA  ++VKA+M  G+LTV V K    +PQ V+ ++I+G++
Sbjct:   18 PFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQ-VKSIDISGAN 161          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-16
Identity = 53/140 (37.86%), Postives = 73/140 (52.14%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFPSLSRGIFPTRQT------QINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D W PF    S      P R+T      +I+W ETP AH+ KA  PG+  ++V V V++ R+LQIS +                   GKF  RF+LP NA  D+VKA M  G+LTV V KE   +   V+ ++I+G
Sbjct:   18 PFSLDTWDPFQGIISTE----PARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVVPKEEEEKKPMVKAIDISG 153          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.755e-16
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = -3
Query:  221 PLSIDLWGPFSD--FPS-LSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSK-EMSLQPQNVRVVEITG 568
            P S+D+W PF +  FPS LS         +++W ET  AH+FKA  PG+  ++V V +++D +L+IS +                   G+F+ +FKLP N   DQVKASM  G+LTVTV K E + +   V+ ++I+G
Sbjct:   20 PFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 54/143 (37.76%), Postives = 74/143 (51.75%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFPSLSRGIFPTRQ---------TQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQIS------------------TDDGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+DLW PF    S+ R + P             +I+W ETP +H+FKA  PG+  ++V V V+E  +L IS                     G+F  RF+LP NA  DQVKA M  G+LTVTV K    +P+ V+ +EI+G
Sbjct:   12 PFSLDLWDPFD---SVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPE-VKAIEISG 150          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFPSLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSK-EMSLQPQNVRVVEITG 568
            P S+D+W PF +    S         +++W ET  AH+FKA  PG+  ++V V +++D +L+IS +                   G F+ +F+LP N   DQVKASM  G+LTVTV K E + +   V+ ++I+G
Sbjct:   21 PFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFPSLSRGIFPTRQ---------TQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQIS------------------TDDGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+DLW PF    S+ R + P             +I+W ETP +H+FKA  PG+  ++V V V+E  +L IS                     G+F  RF+LP NA  DQVKA +  G+LTVTV K    +P+ V+ +EI+G
Sbjct:   12 PFSLDLWDPFD---SVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPE-VKAIEISG 150          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 51/143 (35.66%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  221 PLSIDLWGPFSDF---------PSLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D++ PF  F         P++    F     +++W ETP AH+FKA  PGL  ++V V V++  +LQIS +                   GKFT RF+LP NA  +++KASM  G+L+VTV K    +P+ V+ ++I+G
Sbjct:   18 PFSLDVFDPFEGFLTPSGLANAPAMDVAAFTN--AKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPE-VKSIDISG 157          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 51/140 (36.43%), Postives = 72/140 (51.43%), Query Frame = -3
Query:  221 PLSIDLWG---PFSDFPSLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD---------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P+S+D W    PF    SL+         +++W ETP AH+F A  PG+  DQ  V V++  +L IS +                      GKF  RF+LP  A  DQV ASM+ G+LTVTV KE + +PQ ++ + I+G
Sbjct:   12 PMSVDFWADADPFGAVRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQ-LKAIPISG 150          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 52/136 (38.24%), Postives = 70/136 (51.47%), Query Frame = -3
Query:  221 DLWGPFSD-FPSL-----SRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQIS------------------TDDGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 556
            D W PF   F SL      R        +++W ETP +H+FKA  PG+  ++V V V+E  +L IS                     G+F  RF+LP NA  DQVKASM  G+LTVTV K    +P+ V+ +EI+G
Sbjct:   15 DFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPE-VKAIEISG 149          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = -3
Query:  248 PLSID-LWGPFSDFPSLSRGIFPTRQT----------QINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQIS------------------TDDGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQ 568
            P S+D +W PF   PS    + P  +T          +I+W ETP AH+FKA  PG+  ++V V V++  +L+IS                     G+F  +F+LP NA  DQVKA M  G+LTVTV K  + +PQ
Sbjct:   20 PFSLDEIWDPFFGLPSTLSTV-PRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPKNEAPKPQ 154          
The following BLAST results are available for this feature:
BLAST of CF834763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HS181_ARATH6.031e-1736.5518.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_HELAN1.029e-1637.8617.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS178_ARATH1.755e-1637.6817.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16B_ORYSJ2.993e-1637.7616.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS17A_ARATH6.668e-1634.8117.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS16A_ORYSJ6.668e-1637.0616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS17C_ARATH1.486e-1535.6617.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS166_ORYSJ5.645e-1536.4316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS16C_ORYSJ2.145e-1438.2416.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_CHERU4.779e-1436.7618.3 kDa class I heat shock protein OS=Chenopodium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834763 ID=CF834763; Name=CF834763; organism=Citrus sinensis; type=EST; length=609bp
TTTTTTTTTTTTTTTTTATTTGCAATGATAATTGATATTGATAATTTGAG
TTTTACAATATCCAAAATTACAACATAACACACACACACACACACATCTC
GAATGCTCTGCACAGTACTACACAAGTCTACACTTCAAACCAAACACAAG
CTCACATTATATATATATATATATATATATATAGGCGCAATAATATCACA
AACCCAGAAATTTAGTCAGACCCAGTAATTTCAACAACCCTAACATTTTG
TGGCTGCAGTGACATCTCCTTAGAGACTGTAACAGTGAGCAACCCATAAT
TCATGGAAGCCTTGACCTGATCGGTAATAGCATTAGCAGGCAGCTTAAAC
CTGCTCGTGAACTTGCCATCATCGGTGCTTATTTGGAGCATTCTGTCTTC
ATCGACGAACACTATCACTTGGTCTCCCGTAAGCCCTGGAAAGTAAGCTT
TGAACAAGTGGGCTCTCGGGGTCTCACTCCAGTTGATCTGGGTTTGACGG
GTTGGAAAAATCCCCCGGGAAAGTGAAGGAAAATCACTGAATGGGCCCCA
AAGGTCAATAGATAAGGGGAATTCTTCTAGAAAGTTCTGGAAGGGACCCC
ATACTTCTG
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