CF834772

Overview
NameCF834772
Unique NameCF834772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6272 contig Csv1_Contig6272:416..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PMP20_ASPFU (Putative peroxiredoxin pmp20 OS=Aspergillus fumigatus GN=pmp20 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.386e-20
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = -3
Query:  194 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRAC-QENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG-GAFTFSGAEAMLKAL 583
            +KK ILFA+PGAFTP CS +H+P ++EK  E+++KGVD+VA ++ NDA+VM A  + N    D++L LSD +  F+K+IG   +          R++RYAL+ ++G +    LE       FS AE +LK L
Sbjct:   45 DKKVILFALPGAFTPVCSARHVPEYIEKLPEIRAKGVDVVAVLAYNDAYVMSAWGKANQVTGDDILFLSDPDARFSKSIGWADEEG--------RTKRYALVIDHGKITYAALEPAKNHLEFSSAETVLKHL 168          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PMPA_CANBO (Putative peroxiredoxin-A OS=Candida boidinii GN=PMPA PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLA-ENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK ++ +VPGAFTP C+++HLPG+++    + SKGVD V  IS ND FV++  ++ LG  D  +++ +SD N   TK +G  +DLS   +GLG RS R AL+   +G+V+   +E GG    S A+ ++  L
Sbjct:   38 KKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVISQNDPFVLKGWKKELGAADAKKLVFVSDPNLKLTKKLGSTIDLS--AIGLGTRSGRLALIVNRSGIVEYAAIENGGEVDVSTAQKIIAKL 167          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PMPB_CANBO (Putative peroxiredoxin-B OS=Candida boidinii GN=PMPB PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = -3
Query:  194 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLA-ENGVVKVLNLEEGGAFTFSGAEAMLKAL 580
            KK ++ +VPGAFTP C+++HLPG+++    + SKGVD V  I+ ND FV++  ++ LG  D  +++ +SD N   TK +G  +DLS   +GLG RS R AL+   +G+V+   +E GG    S A+ ++  L
Sbjct:   38 KKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVITQNDPFVLKGWKKELGAADAKKLIFVSDPNLKLTKKLGSTIDLSS--IGLGTRSGRLALIVNRSGIVEYAAIENGGEVDVSTAQKIIAKL 167          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: YRP2_RHIET (Putative peroxiredoxin in rpoN2 3'region OS=Rhizobium etli PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  239 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 580
            K+ ILF++PGAFTP CS   LP F     E K  G+D + C+SVNDAFVM A  ++ G+ + V L+ DG+G FT+ +G  + ++   +G G+RS RYA +  NGVV+    EEG
Sbjct:   41 KRVILFSLPGAFTPICSTFQLPDFESLYVEFKKNGIDDIYCLSVNDAFVMNAWGKSQGLKN-VKLIPDGSGEFTRKMG--MLVAKDNLGFGLRSWRYAAVINNGVVEGWFEEEG 151          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = -3
Query:  203 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGA-FTFSGAEAML 580
            KK ++F +PGA+T  CSQ H+P +     +LK+KGVD V C+SVND + +    E L   D +    D +G F K++  E+DLS     LG RS R++   ++G +K  N+E   + F  SGAE +L
Sbjct:   71 KKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLS--AALLGRRSHRWSAFVDDGKIKAFNVEVAPSDFKVSGAEVIL 195          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: Y4VD_RHISN (Putative peroxiredoxin y4vD OS=Rhizobium sp. (strain NGR234) GN=NGR_a01200 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -3
Query:  239 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 580
            K+ +LF++PGAFTPTCS + LP F     E    G++ V C+SVNDAFVM A  + LG+ ++V L+ DG+G FT+ +G  + ++   +G G+RS RYA +  + VV+    EEG
Sbjct:   41 KRVVLFSLPGAFTPTCSTQQLPDFERLYDEFGKVGIEAVYCLSVNDAFVMNAWGKALGL-EKVRLIPDGSGEFTRKMG--MLVAKDNLGFGMRSWRYAAVVNDSVVEQWFEEEG 151          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: MALF2_MALFU (Putative peroxiredoxin OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = -3
Query:  239 KKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEG 580
            KK ++ ++PGA+TP C Q+H+P  V++  ELK+KGVD V  I+ ND FVM A        D+V+  +D +  F+KA+G  +DLS K    G R+ RYAL+ ++  +     +EG
Sbjct:   49 KKVVIVSIPGAYTPICHQQHIPPLVKRVDELKAKGVDAVYVIASNDPFVMAAWGNFNNAKDKVVFATDIDLAFSKALGATIDLSAK--HFGERTARYALIIDDNKIVDFASDEG 160          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: AHP1_YEAST (Peroxiredoxin type-2 OS=Saccharomyces cerevisiae GN=AHP1 PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14
Identity = 52/136 (38.24%), Postives = 75/136 (55.15%), Query Frame = -3
Query:  194 NKKAILFAVPGAFTPTCSQKHLPGFVEKSAEL-KSKGVDIVACISVNDAFVMRACQENLGIND--EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVR-SRRYALLAENGVVKVLNLE--EGGAFTFSGAEAMLKAL 583
            NKK I+   P AF+PTC+  H+PG++    EL K K VD V  ++V++ F  +A  ++LG+ D   +   SD    FTK+IG EL + D     GV  S R+A++ ENG+V     E   G   T S  E++L  L
Sbjct:   46 NKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGD-----GVYWSGRWAMVVENGIVTYAAKETNPGTDVTVSSVESVLAHL 176          
BLAST of CF834772 vs. ExPASy Swiss-Prot
Match: PMP20_SCHPO (Putative peroxiredoxin pmp20 OS=Schizosaccharomyces pombe GN=pmp20 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = -3
Query:  194 KAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDIVACISVNDAFVMRACQENL--GINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLG-VRSRRYALLAENG-VVKVLNLEEGGAFTFSGAEAMLKAL 577
            K I+  VPGAFTP CS + +PG++    +  +KG+  +  ++VND FV +A +++   G    V  ++D NG FTKA     D S     LG +RS+RYA + ENG VVKV    E      S A+ +L +L
Sbjct:   29 KFIIVGVPGAFTPPCSSQ-VPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGL---LGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKVLSSL 156          
The following BLAST results are available for this feature:
BLAST of CF834772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PMP20_ASPFU2.386e-2042.42Putative peroxiredoxin pmp20 OS=Aspergillus fumiga... [more]
PMPA_CANBO3.116e-2040.91Putative peroxiredoxin-A OS=Candida boidinii GN=PM... [more]
PMPB_CANBO4.070e-2040.15Putative peroxiredoxin-B OS=Candida boidinii GN=PM... [more]
YRP2_RHIET3.446e-1945.61Putative peroxiredoxin in rpoN2 3'region OS=Rhizob... [more]
PRX2F_ORYSJ4.500e-1939.37Peroxiredoxin-2F, mitochondrial OS=Oryza sativa su... [more]
Y4VD_RHISN2.233e-1843.86Putative peroxiredoxin y4vD OS=Rhizobium sp. (stra... [more]
MALF2_MALFU7.185e-1740.35Putative peroxiredoxin OS=Malassezia furfur PE=1 S... [more]
AHP1_YEAST9.710e-1438.24Peroxiredoxin type-2 OS=Saccharomyces cerevisiae G... [more]
PMP20_SCHPO1.656e-1338.64Putative peroxiredoxin pmp20 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834772 ID=CF834772; Name=CF834772; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTGGGAAAAAAAATAAATTGAGCAGGATAAACCTCT
AAACAGCTCTGAAAATTCAAATGCACAAGGAGAAGTACAAATTTCAAAAC
CCGAAACACGAGTTTTTAGTAACAAAGACACATTATTCAACACTCTAATG
AAGTTAAATTATTAAAAAAAAAAAAACTATCTCACCGAAATCACAGAGCT
TTGAGCATGGCCTCAGCTCCGCTGAAAGTAAAGGCGCCGCCCTCCTCCAA
ATTGAGCACCTTAACGACGCCGTTTTCTGCCAAAAGGGCGTACCTCCTGG
ACCTAACTCCCAATCCCATAGGCTTGTCACTCAAGTCGAGCTCACAGCCA
ATAGCCTTAGTGAACACCCCGTTCCCATCAGACAACAAAAGCACTTCATC
GTTGATTCCAAGATTCTCCTGGCAGGCCCTCATAACGAAGGCGTCGTTCA
CGGAAATGCAGGCGACGATGTCGACGCCTTTGGATTTCAACTCGGCGGAT
TTCTCGACGAAGCCCGGGAGGTGTTTTTGGGAGCAGGTGGGGGTGAAGGC
GCCGGGGACGGCGAAGAGGATTGCTTTTTTATTGG
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