CF834778

Overview
NameCF834778
Unique NameCF834778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig516 contig Csv1_Contig516:208..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_ACTP7 (Hydroxyacylglutathione hydrolase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=gloB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 50/163 (30.67%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMR-VDLPE 512
            P + VYG P +  +     V+  D  ++  + +V  + +  HT   +SY + G E     +F GD LF  GCG+ F G+ +  + +L     +LP+  +++  HEYT+ NL FA  V A +                  PT+P+T+E EL+ NPF++ VDL +
Sbjct:   70 PQLSVYG-PQEVAQFANRIVQPEDHLTLFDY-DVRVIESAGHTAQHVSY-LFGNE----YLFCGDVLFSGGCGRVFTGNYQAQFDAL-QRFKALPEFVEIFPAHEYTLSNLKFAEAVLAPSCALFEIQERAEILRSRNQPTLPTTLERELQINPFLQAVDLDQ 224          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_ACTP2 (Hydroxyacylglutathione hydrolase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=gloB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 50/163 (30.67%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMR-VDLPE 512
            P + VYG P +  +     V+  D  ++  + +V  + +  HT   +SY + G E     +F GD LF  GCG+ F G+ +  + +L     +LP+  +++  HEYT+ NL FA  V A +                  PT+P+T+E EL+ NPF++ VDL +
Sbjct:   70 PQLSVYG-PQEVAQFANRIVQPEDHLTLFDY-DVRVIESAGHTAQHVSY-LFGNE----YLFCGDALFSGGCGRVFTGNYQAQFDAL-QRFKALPEFVEIFPAHEYTLSNLKFAEAVLAPSCALFEIQERAEILRSRNQPTLPTTLERELQINPFLQAVDLDQ 224          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_POLSJ (Hydroxyacylglutathione hydrolase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=gloB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 47/152 (30.92%), Postives = 66/152 (43.42%), Query Frame = 3
Query:   63 VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFE-GSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPEL 515
            + G    V+ GD   +G  V +  L TP HT   + +       E PA+F+GDTLF AG G     G    +Y +    L  LP  T VY GH+Y   NL F L  E  N                   +  +T+++E E N F+R+  P +
Sbjct:   86 IAGVDRGVKAGDVIKVGKTVELECLDTPGHT---MCHICLRSHTEQPALFSGDTLFNAGAGNVHNGGDVNALYATFAEQLARLPDDTLVYPGHDYIENNLRFTLAREPDNAAAKALLPSVTDHDP--AKSAVTTLKDEKEFNTFLRLSSPSV 232          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_HAEPS (Hydroxyacylglutathione hydrolase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=gloB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 49/157 (31.21%), Postives = 72/157 (45.86%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMR 497
            P + +YG   + V    +Q+   ++      + V  + +  HT   ISY V     ++  +F GD LF  GCG+ F G  +  + +L     +LP   +VY GHEYT  NL FA  V A +                  PT+PSTI  E + NPFM+
Sbjct:   70 PDMLIYGS--EEVSQFANQIVYPEQQFELLGLKVRVIESAGHTAQHISYLV-----DNEYLFCGDALFSGGCGRVFTGDYQAQFDAL-QRFKALPDFVKVYAGHEYTQSNLKFAEAVMATSCSLMEHQERADILRSQHKPTLPSTIGVEKQINPFMQ 218          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_NITOC (Hydroxyacylglutathione hydrolase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gloB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 54/185 (29.19%), Postives = 74/185 (40.00%), Query Frame = 3
Query:   57 DNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFE-GSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPEL--------QELVGFNDPIEALREIRKRKDNW 584
            D ++G    +  GD   +G  V +  L TP HT   +  +        PA+F GDTLF AG G     G    +Y +    L  LP  T++Y GHEY   NL F L  E  N                      ST+  E E N F R+D P L         +L    DP     ++R+ ++ W
Sbjct:   84 DKIRGIDEGLAAGDTVKVGNGVALKVLDTPGHTMSHLCLFAPSNP---PALFCGDTLFNAGAGNCHNGGDPNALYATFTQQLALLPCNTRIYPGHEYIENNLGFTLDREPDNEQAMALLAEVKSQDPN--HAFVSTLALEKEINTFFRLDNPTLITKLRETFPDLPRVPDPKTVFLKLRELRNKW 263          
The following BLAST results are available for this feature:
BLAST of CF834778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GLO2_ACTP75.778e-1230.67Hydroxyacylglutathione hydrolase OS=Actinobacillus... [more]
GLO2_ACTP25.778e-1230.67Hydroxyacylglutathione hydrolase OS=Actinobacillus... [more]
GLO2_POLSJ9.855e-1230.92Hydroxyacylglutathione hydrolase OS=Polaromonas sp... [more]
GLO2_HAEPS9.855e-1231.21Hydroxyacylglutathione hydrolase OS=Haemophilus pa... [more]
GLO2_NITOC1.287e-1129.19Hydroxyacylglutathione hydrolase OS=Nitrosococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834778 ID=CF834778; Name=CF834778; organism=Citrus sinensis; type=EST; length=607bp
GGGAACGAACGATGAAGGAGATGGTGCCTGGGATTAAGGTGTATGGTGGC
CCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATGGTGATAA
GTTCTCAATTGGAGCTCATGTCAATGTACTGTCTCTTCACACACCTTGCC
ATACCAAAGGTCGCATAAGTTATTATGTGACTGGAAAAGAGGGAGAAGAC
CCAGCTGTTTTCACTGGAGACACACTGTTTGTTGCTGGTTGTGGAAAATT
TTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTGCGTGACATTGG
GCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATGAGTACACAGTG
AAGAACCTACTATTTGCTCTTACTGTCGAAGCAGGCAATGTGAAGCTACA
GCAAAAATTGGCGTGGGCTCAGAACCAGCAGCAAGCTGGCTTGCCAACCA
TTCCCTCAACCATTGAGGAAGAGTTGGAGACGAACCCCTTCATGCGTGTT
GATCTACCAGAGCTTCAGGAGTTGGTTGGTTTCAATGATCCCATTGAAGC
TCTCCGGGAGATAAGGAAGCGAAAGGACAATTGGAGAGGCTGATTAAGGA
CCTGCAT
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