CF834778

Overview
NameCF834778
Unique NameCF834778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig516 contig Csv1_Contig516:208..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_NITEC (Hydroxyacylglutathione hydrolase OS=Nitrosomonas eutropha (strain C91) GN=gloB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.416e-26
Identity = 75/194 (38.66%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   33 IKVYGGPLDNVKGCTHQVENGDKFS---IGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPEL----QELVG--FNDPIEALREIRKRKDNWR 587
            I VYG   + + G TH +  GD  S   +    +VL +  P HT G I+YY     G++  +F GDTLF  GCG+ FEGSA+QM  SL   L SLP  T VYC HEYT+ N+ FA  ++  N                 +PT+PS++  E  TNPF+R D P +     + VG   NDP+     IR  K+N++
Sbjct:   71 IPVYGPANEKIPGMTHPLTGGDTLSFPELSLEFSVLDI--PGHTAGHIAYY-----GQN-YLFCGDTLFACGCGRIFEGSAQQMLASL-QKLASLPDETLVYCAHEYTLANVRFARVLDPDNPDLIKLESTVEEKLKQNIPTLPSSLAVEKATNPFLRCDQPAIIHSASQHVGRHLNDPVSVFAAIRDWKNNFQ 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_DICDI (Hydroxyacylglutathione hydrolase OS=Dictyostelium discoideum GN=hagh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.416e-26
Identity = 74/203 (36.45%), Postives = 106/203 (52.22%), Query Frame = 3
Query:   12 MKEMVPGIKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKE--GEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEA--GNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLP--------ELQELVGFNDPIEALREIRKRKDNW 584
            +K ++  I VYG   +  +G T ++EN +   IG+ + + +L  P HT   + Y +  +    +  ++FTGDTLF+ GCG+ FEG+ EQMY +L   +G LP  T VY GHEYT+KNL FA T+E+   N                G  T+PS+I +E   NPFMR  LP        E    +    PI+ L  IR  KD +
Sbjct:   68 IKTIIKDINVYGRD-ERFEGITKKLENNEVLKIGS-LKIKTLDAPAHTSSHVLYLIEDENEPNQVKSLFTGDTLFIGGCGRLFEGNPEQMYNALYNVIGKLPDNTLVYVGHEYTLKNLEFAKTLESENENKELYNFYDQCKEKLANGEFTVPSSIAQEKLINPFMRCHLPSIYNHYLKENPNSINPPSPIDVLGFIRSLKDKF 268          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_MICAN (Hydroxyacylglutathione hydrolase OS=Microcystis aeruginosa (strain NIES-843) GN=gloB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26
Identity = 71/189 (37.57%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   27 PGIKVYGGPLDN--VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTG-KEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPIEALREIRKRKDNW 584
            P + VYGG  D   + G    +E GD+         +    P HT+  I+YY      G+   +F GDTLF  GCG+ FEG+  QM  SL   L SLP  T+V+C HEYT+ NL FALTV+  N                 LPTIP+ +  E  TNPF+R D P L   +  ++P++    +R +KDN+
Sbjct:   71 PHLCVYGGKEDRGRIPGQQLFLEEGDRVEFAGRWAEV-FFVPGHTRAHIAYYFPPVNPGDYGELFCGDTLFSGGCGRLFEGTPGQMVASL-TKLRSLPDQTRVWCAHEYTLNNLKFALTVDPNNAALQQRYREVEKHRAEDLPTIPAILGTEKLTNPFLRWDSPALAMTMDSSEPVQVFARLRGKKDNF 257          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_HALHL (Hydroxyacylglutathione hydrolase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gloB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26
Identity = 66/162 (40.74%), Postives = 86/162 (53.09%), Query Frame = 3
Query:   33 IKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQ 518
            + V+G   + +    H +  G+ FS+        L  P HT G I+Y   G       +F+GD LF  GCG+ FEG+A QM+ SL   L +LP  T+V CGHEYTVKNL FA   +  N                G PT+PST+ EEL TNPF+R D PEL+
Sbjct:   73 VPVFGPATETIPTVDHPITGGEHFSLEGFGEFRVLDCPGHTAGHIAYLWEGH------LFSGDALFAGGCGRVFEGTAGQMHASL-QHLAALPADTRVCCGHEYTVKNLEFAHCADPKNDRLAQRLQAARDARAAGQPTVPSTLAEELATNPFLRTDCPELR 227          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUSU (Hydroxyacylglutathione hydrolase OS=Brucella suis GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   75 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUSI (Hydroxyacylglutathione hydrolase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   78 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 258          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUO2 (Hydroxyacylglutathione hydrolase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=gloB PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   75 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUME (Hydroxyacylglutathione hydrolase OS=Brucella melitensis GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   75 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUMB (Hydroxyacylglutathione hydrolase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   78 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 258          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUC2 (Hydroxyacylglutathione hydrolase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   78 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 258          
The following BLAST results are available for this feature:
BLAST of CF834778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GLO2_NITEC1.416e-2638.66Hydroxyacylglutathione hydrolase OS=Nitrosomonas e... [more]
GLO2_DICDI1.416e-2636.45Hydroxyacylglutathione hydrolase OS=Dictyostelium ... [more]
GLO2_MICAN3.156e-2637.57Hydroxyacylglutathione hydrolase OS=Microcystis ae... [more]
GLO2_HALHL3.156e-2640.74Hydroxyacylglutathione hydrolase OS=Halorhodospira... [more]
GLO2_BRUSU5.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella suis ... [more]
GLO2_BRUSI5.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella suis ... [more]
GLO2_BRUO25.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella ovis ... [more]
GLO2_BRUME5.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella melit... [more]
GLO2_BRUMB5.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella melit... [more]
GLO2_BRUC25.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella canis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06B17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834778 ID=CF834778; Name=CF834778; organism=Citrus sinensis; type=EST; length=607bp
GGGAACGAACGATGAAGGAGATGGTGCCTGGGATTAAGGTGTATGGTGGC
CCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATGGTGATAA
GTTCTCAATTGGAGCTCATGTCAATGTACTGTCTCTTCACACACCTTGCC
ATACCAAAGGTCGCATAAGTTATTATGTGACTGGAAAAGAGGGAGAAGAC
CCAGCTGTTTTCACTGGAGACACACTGTTTGTTGCTGGTTGTGGAAAATT
TTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTGCGTGACATTGG
GCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATGAGTACACAGTG
AAGAACCTACTATTTGCTCTTACTGTCGAAGCAGGCAATGTGAAGCTACA
GCAAAAATTGGCGTGGGCTCAGAACCAGCAGCAAGCTGGCTTGCCAACCA
TTCCCTCAACCATTGAGGAAGAGTTGGAGACGAACCCCTTCATGCGTGTT
GATCTACCAGAGCTTCAGGAGTTGGTTGGTTTCAATGATCCCATTGAAGC
TCTCCGGGAGATAAGGAAGCGAAAGGACAATTGGAGAGGCTGATTAAGGA
CCTGCAT
back to top