CF834778

Overview
NameCF834778
Unique NameCF834778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig516 contig Csv1_Contig516:208..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUAB (Hydroxyacylglutathione hydrolase OS=Brucella abortus GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   75 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUA2 (Hydroxyacylglutathione hydrolase OS=Brucella abortus (strain 2308) GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   75 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_BRUA1 (Hydroxyacylglutathione hydrolase OS=Brucella abortus (strain S19) GN=gloB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   30 GIKVYGGPLDNVK--GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND-PIEAL-REIRKRKD 578
            G+ + G   +  K  G    V+ GD+F+ G    V  + TP HT G ISYY+   +     VFTGDTLF  GCG+ FEG+   M+ SL   L +LP  T +YCGHEYT  N  FALT++  N                   T+PSTI  E+ TNPF+R     ++  +G  D P EA+  EIRKRKD
Sbjct:   78 GVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLF-KVKVISTPGHTAGGISYYLPDAK----VVFTGDTLFALGCGRLFEGTPATMFHSL-EKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQDAPDEAVFAEIRKRKD 258          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_RHILO (Hydroxyacylglutathione hydrolase OS=Rhizobium loti GN=gloB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26
Identity = 69/176 (39.20%), Postives = 91/176 (51.70%), Query Frame = 3
Query:   63 VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFN--DPIEALREIRKRKDNW 584
            + G    VE G    +G    +  + TP HT G +SY++   +      FT DTLF  GCG+ FE     MY+SL   L +LP  T +YCGHEYT+ N  FALTV+  N                  PT+P+TI EEL TNPF+R   P +++ +G       E   EIRKRKDN+
Sbjct:   86 IPGIDETVEEGSVLHLGDE-RIEVIATPGHTAGHVSYHLPASK----VAFTADTLFALGCGRLFECKPPVMYESLR-KLAALPAATTIYCGHEYTLANARFALTVDPTNSALKERATRIEALRVDNKPTLPTTIGEELSTNPFLRWHDPAIRKHLGMEKAGDAEVFAEIRKRKDNF 255          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_RHIME (Hydroxyacylglutathione hydrolase OS=Rhizobium meliloti GN=gloB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.181e-26
Identity = 69/176 (39.20%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   63 VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFNDPIEA--LREIRKRKDNW 584
            + G    V +GD+F    H  V  + TP HT G + Y++     ED  +F  DTLF  GCG+ FEG+A+ M+QSL   L +LP  T +Y GHEYT+ N  FA+TV+  N                G  T P+T+  E  TNPF+R   P+++ L+G     +A    EIRKRKDN+
Sbjct:   87 IPGIDRTVGHGDRFDFAGHP-VDVIETPGHTSGHVCYHLP----EDKLLFAADTLFALGCGRLFEGTADTMWQSLS-RLMALPDDTAIYFGHEYTLANAHFAITVDPENSALKERAAEIEETRSDGGFTAPTTMGLEKRTNPFLRAGDPKIRALLGMEKASDAAVFAEIRKRKDNF 256          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_PSEHT (Hydroxyacylglutathione hydrolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gloB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.181e-26
Identity = 76/195 (38.97%), Postives = 97/195 (49.74%), Query Frame = 3
Query:   27 PGIKVYGGPLDNVKGCTHQVENGDKFSI-GAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV--------GFNDPIEALREIRKRKDNW 584
            P I VYG      KG T Q+ +G   ++     N+++  TP HT   I Y        +   FTGDTLF  GCG+ FEGSAEQM+ S    L  LP   +VYC HEYT  NL FA  +E  N                   T+PSTI +EL+ NPFMR DLP + EL+          N+P E    +RK KD++
Sbjct:   72 PNIAVYGPTNSPFKGITQQLTDGQSITVLNTAFNIIA--TPGHTLDHICYV------NEQLAFTGDTLFSGGCGRLFEGSAEQMWHSF-NKLRELPADCKVYCTHEYTQANLAFATAIEPRNPELLAYSKRVDELRSKNEITLPSTIGQELKINPFMRSDLPNITELLPKEFCSVTKNNEPWENFAGLRKFKDHF 257          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_RHOP2 (Hydroxyacylglutathione hydrolase OS=Rhodopseudomonas palustris (strain HaA2) GN=gloB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.199e-25
Identity = 66/169 (39.05%), Postives = 91/169 (53.85%), Query Frame = 3
Query:   81 QVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGF--NDPIEALREIRKRKDN 581
            +VE GD   +G  +    L TP HT   ISY       +D A+F  DTLF  GCG+ FEG+   M++SL + L +LP   ++YCGHEYT  N+ FALT+E  N                G PTIP T+ EE + N F+R D+P +   +GF      +   E+R+RK+N
Sbjct:   92 RVEEGDVVKVGG-LEARVLETPGHTLDHISYVFA----DDRALFAADTLFSIGCGRVFEGTYPMMWESL-LKLRALPDDYKLYCGHEYTASNVKFALTIEPENAALQARAKQVEQQRGAGRPTIPVTLGEEKQANVFLRADVPSVAAAIGFAGESAADVFGELRERKNN 254          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_ALHEH (Hydroxyacylglutathione hydrolase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gloB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 69/189 (36.51%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   33 IKVYGGPLDNVKGCTHQVENGDKFSI-GAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELV------GFNDPIEALREIRKRKD 578
            + VYG   ++V G +  +   D F + G  + +  L  P HT G I+    G      A+F+GD LF  GCG+ FEG+ EQMY SL   L +LP+ T+VYCGHEYT+ NL FA  VE  N                G PT+PS + +E  TNPF+R  LP ++           ++P+     +R+ KD
Sbjct:   73 VPVYGPADESVPGVSQPLREPDAFEVPGLGLPLRVLDVPGHTAGHIALVADG------ALFSGDALFAGGCGRLFEGTPEQMYASL-GKLAALPEATRVYCGHEYTLANLRFAHQVEPDNPNLTQRLRQAEAARQRGEPTVPSRMADEHATNPFLRAHLPAVRTAAERWSGQTLDEPVAVFAALRRWKD 254          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_NITEU (Hydroxyacylglutathione hydrolase OS=Nitrosomonas europaea GN=gloB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.045e-25
Identity = 69/193 (35.75%), Postives = 95/193 (49.22%), Query Frame = 3
Query:   33 IKVYGGPLDNVKGCTHQVENGDKFSIGAHVNVLS-LHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVG------FNDPIEALREIRKRKDNWRG 590
            I VYG   + + G TH +  GD          LS L  P HT G I+ +   +      +F GDTLF  GCG+ FEG+A+QM+ SL   L  LP  TQVYC HEYT+ N+ FA  ++  N                 +PT+PS++  E  TNPF+R + P + +           DP+     IR  K+N+RG
Sbjct:   71 IPVYGPASEKIPGMTHPLAEGDTLVFPELSLELSILDVPGHTAGHIACHGQNR------LFCGDTLFACGCGRIFEGNAQQMFDSL-QKLTDLPDETQVYCAHEYTLDNIRFARAIDPDNPELIELESNVEEKREQNMPTLPSSLAAEKATNPFLRCNQPAIIQSASRYAGRQLTDPVSVFAAIRDWKNNFRG 256          
BLAST of CF834778 vs. ExPASy Swiss-Prot
Match: GLO2_MESSB (Hydroxyacylglutathione hydrolase OS=Mesorhizobium sp. (strain BNC1) GN=gloB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 70/174 (40.23%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   63 VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGRISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEAGNVXXXXXXXXXXXXXXXGLPTIPSTIEEELETNPFMRVDLPELQELVGFND--PIEALREIRKRKD 578
            + G   QV  GD   +G +     + TP HT G I++Y   K G     FT DTLF  GCG+ FE     MY+SL   L  LP  T +YCGHEYT  N  FAL+V+  N                G PT+P+T+ EE+ TNPF+R   P L+  +G  +   +E   EIRKRKD
Sbjct:   86 IPGIDRQVNEGDVVRVG-NQEARVIETPGHTAGHITFYFA-KAG---IAFTADTLFALGCGRLFECKPPVMYESL-KKLVELPLETVIYCGHEYTESNARFALSVDPTNSALKERAKKIEALRREGRPTLPTTLGEEMATNPFLRCHDPVLRNNLGMKNAADVEVFAEIRKRKD 253          
The following BLAST results are available for this feature:
BLAST of CF834778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GLO2_BRUAB5.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella abort... [more]
GLO2_BRUA25.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella abort... [more]
GLO2_BRUA15.383e-2640.64Hydroxyacylglutathione hydrolase OS=Brucella abort... [more]
GLO2_RHILO7.030e-2639.20Hydroxyacylglutathione hydrolase OS=Rhizobium loti... [more]
GLO2_RHIME9.181e-2639.20Hydroxyacylglutathione hydrolase OS=Rhizobium meli... [more]
GLO2_PSEHT9.181e-2638.97Hydroxyacylglutathione hydrolase OS=Pseudoalteromo... [more]
GLO2_RHOP21.199e-2539.05Hydroxyacylglutathione hydrolase OS=Rhodopseudomon... [more]
GLO2_ALHEH1.566e-2536.51Hydroxyacylglutathione hydrolase OS=Alkalilimnicol... [more]
GLO2_NITEU2.045e-2535.75Hydroxyacylglutathione hydrolase OS=Nitrosomonas e... [more]
GLO2_MESSB3.489e-2540.23Hydroxyacylglutathione hydrolase OS=Mesorhizobium ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06B17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834778 ID=CF834778; Name=CF834778; organism=Citrus sinensis; type=EST; length=607bp
GGGAACGAACGATGAAGGAGATGGTGCCTGGGATTAAGGTGTATGGTGGC
CCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATGGTGATAA
GTTCTCAATTGGAGCTCATGTCAATGTACTGTCTCTTCACACACCTTGCC
ATACCAAAGGTCGCATAAGTTATTATGTGACTGGAAAAGAGGGAGAAGAC
CCAGCTGTTTTCACTGGAGACACACTGTTTGTTGCTGGTTGTGGAAAATT
TTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTGCGTGACATTGG
GCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATGAGTACACAGTG
AAGAACCTACTATTTGCTCTTACTGTCGAAGCAGGCAATGTGAAGCTACA
GCAAAAATTGGCGTGGGCTCAGAACCAGCAGCAAGCTGGCTTGCCAACCA
TTCCCTCAACCATTGAGGAAGAGTTGGAGACGAACCCCTTCATGCGTGTT
GATCTACCAGAGCTTCAGGAGTTGGTTGGTTTCAATGATCCCATTGAAGC
TCTCCGGGAGATAAGGAAGCGAAAGGACAATTGGAGAGGCTGATTAAGGA
CCTGCAT
back to top