CF834781

Overview
NameCF834781
Unique NameCF834781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834781_ssr525 microsatellite CF834781_ssr525:525..536. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:555..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGRKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKGSGEGRKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS------IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA K+LP                      +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 KPKAEKRLPAGKAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.625e-40
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = -3 
Query:  237 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 6.040e-40
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            ETYKIY+FKVLKQVHPDIGIS KAMGIMNS +ND FEK+A E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   37 ETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 7.888e-40
Identity = 87/117 (74.36%), Postives = 95/117 (81.20%), Query Frame = -3 
Query:  237 KPKAGKKLPXXXXXXXXXXXXXXXS-IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 584
            KPKA KK+P                 +ETYKIYIFKVLKQVHPDIGISSKAM I NS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   19 KPKAEKKVPTSKEGGEKKGKKKSKKSMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135
The following BLAST results are available for this feature:
BLAST of CF834781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B7_ORYSI3.541e-4072.13Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_ORYSJ3.541e-4072.13Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B4_ORYSI3.541e-4072.13Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_ORYSJ3.541e-4072.13Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI3.541e-4072.13Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B10_ORYSJ3.541e-4072.13Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI3.541e-4072.13Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_WHEAT4.625e-4090.11Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]
H2B5_ARATH6.040e-4091.11Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]
H2B4_WHEAT7.888e-4074.36Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834781 ID=CF834781; Name=CF834781; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTCTAAATCATATTTCATTTTCATATTCCCCCTTAAAGAA
CATGCACATCACCTGGGATCAGGTCCAAATTCCTTGTACATCCAAACAAA
CCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTTC
ATCTAGCAAAATTAAAGGCCTAAACTACTAACTACACAAATCACGTGGCA
CCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACT
TAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCA
GGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGG
CTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGA
AAATATCGTTGAGGAGGCTGTTCATGATTCCCATGGCCTTGCTCGAGATT
CCGATATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTA
CGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGCCGCCAGAGGCGG
CTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
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