CF834781

Overview
NameCF834781
Unique NameCF834781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.030e-39
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = -3
Query:  237 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 509
            +ETYKIYIFKVLKQVHPDIGISSKAM IMNS +NDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   48 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 138          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 8.722e-39
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = -3
Query:  240 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 509
            +ETYK+YI+KVLKQVHPD GISSKAM IMNS +NDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 8.722e-39
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = -3
Query:  240 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 509
            +ETYK+YI+KVLKQVHPD GISSKAM IMNS +NDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 8.722e-39
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = -3
Query:  240 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 509
            +ETYK+YI+KVLKQVHPD GISSKAM IMNS +NDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   66 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 8.722e-39
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = -3
Query:  240 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 509
            +ETYK+YI+KVLKQVHPD GISSKAM IMNS +NDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.488e-38
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = -3
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            ETYK+YI+KVLKQVHPD GISSKAM IMNS +NDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.488e-38
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = -3
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            ETYK+YI+KVLKQVHPD GISSKAM IMNS +NDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.392e-36
Identity = 78/88 (88.64%), Postives = 81/88 (92.05%), Query Frame = -3
Query:  240 TYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 503
            T KIYIFKVLKQVHPDIGISSKAMGIMNS +NDIFEKLA EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTKFTS
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.392e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.392e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
The following BLAST results are available for this feature:
BLAST of CF834781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3_WHEAT1.030e-3989.01Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]
H2B4_CHLRE8.722e-3986.67Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE8.722e-3986.67Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE8.722e-3986.67Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE8.722e-3986.67Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA1.488e-3886.67Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA1.488e-3886.67Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA1.392e-3688.64Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B3B_MOUSE1.392e-3682.22Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN1.392e-3682.22Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834781 ID=CF834781; Name=CF834781; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTCTAAATCATATTTCATTTTCATATTCCCCCTTAAAGAA
CATGCACATCACCTGGGATCAGGTCCAAATTCCTTGTACATCCAAACAAA
CCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTTC
ATCTAGCAAAATTAAAGGCCTAAACTACTAACTACACAAATCACGTGGCA
CCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACT
TAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCA
GGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGG
CTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGA
AAATATCGTTGAGGAGGCTGTTCATGATTCCCATGGCCTTGCTCGAGATT
CCGATATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTA
CGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGCCGCCAGAGGCGG
CTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
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