CF834781

Overview
NameCF834781
Unique NameCF834781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834781_ssr525 microsatellite CF834781_ssr525:525..536. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:555..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1O_HUMAN (Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.819e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1B_HUMAN (Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.819e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_DANRE (Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2F_HUMAN (Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2B_MOUSE (Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1_PONAB (Histone H2B type 1 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1_DANRE (Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1_BOVIN (Histone H2B type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.375e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF834781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1O_HUMAN1.819e-3683.33Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO ... [more]
H2B1B_HUMAN1.819e-3683.33Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB ... [more]
H2B3_DANRE2.375e-3683.33Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3[more]
H2B2F_HUMAN2.375e-3682.22Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF ... [more]
H2B2B_MOUSE2.375e-3682.22Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb ... [more]
H2B1_PONAB2.375e-3682.22Histone H2B type 1 OS=Pongo abelii PE=2 SV=3[more]
H2B1_DANRE2.375e-3683.33Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 ... [more]
H2B1_BOVIN2.375e-3682.22Histone H2B type 1 OS=Bos taurus PE=1 SV=2[more]
H2B1N_HUMAN2.375e-3682.22Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1M_MOUSE2.375e-3682.22Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834781 ID=CF834781; Name=CF834781; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTCTAAATCATATTTCATTTTCATATTCCCCCTTAAAGAA
CATGCACATCACCTGGGATCAGGTCCAAATTCCTTGTACATCCAAACAAA
CCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTTC
ATCTAGCAAAATTAAAGGCCTAAACTACTAACTACACAAATCACGTGGCA
CCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACT
TAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCA
GGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGG
CTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGA
AAATATCGTTGAGGAGGCTGTTCATGATTCCCATGGCCTTGCTCGAGATT
CCGATATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTA
CGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGCCGCCAGAGGCGG
CTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
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