CF834781

Overview
NameCF834781
Unique NameCF834781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834781_ssr525 microsatellite CF834781_ssr525:525..536. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:555..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IYI+KVLKQVHPD GISSKAM IMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   26 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IYI+KVLKQVHPD GISSKAM IMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IY++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IYI+KVLKQVHPD GISSKAM IMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.291e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y +Y++KVLKQVHPD GISSKAMGIMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.911e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IYI+KVLKQVHPD G+SSKAM IMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 121
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 6.911e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IYI+KVLKQVHPD GISSKAM IMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF834781 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 6.911e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = -3 
Query:  237 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSLLNDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 506
            E+Y IYI+KVLKQVHPD GISSKAM IMNS +NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
The following BLAST results are available for this feature:
BLAST of CF834781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_ONCMY5.291e-3682.22Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2B_LITVA5.291e-3683.33Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B3_TIGCA5.291e-3683.33Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B2E_MOUSE5.291e-3681.11Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B1_TIGCA5.291e-3683.33Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1K_HUMAN5.291e-3681.11Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ... [more]
H2B1K_BOVIN5.291e-3681.11Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B_PATGR6.911e-3682.22Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B_DROYA6.911e-3683.33Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]
H2B_DROTE6.911e-3683.33Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834781 ID=CF834781; Name=CF834781; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTCTAAATCATATTTCATTTTCATATTCCCCCTTAAAGAA
CATGCACATCACCTGGGATCAGGTCCAAATTCCTTGTACATCCAAACAAA
CCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTTC
ATCTAGCAAAATTAAAGGCCTAAACTACTAACTACACAAATCACGTGGCA
CCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACT
TAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCA
GGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGG
CTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGA
AAATATCGTTGAGGAGGCTGTTCATGATTCCCATGGCCTTGCTCGAGATT
CCGATATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTA
CGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTCTTGCCGCCAGAGGCGG
CTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCT
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