CF834782

Overview
NameCF834782
Unique NameCF834782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_CHAGB (Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.022e-34
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K A SGD          ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   30 KTAPSGDKKKRTKARK-ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2BE1_PSAMI (Histone H2B.1, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.022e-34
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y IYI+KVLKQVHPD G+SS+AM IMNSF+NDIFE++A EASRL +YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   33 ESYGIYIYKVLKQVHPDTGVSSRAMTIMNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 122          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B2_CANAL (Histone H2B.2 OS=Candida albicans GN=HTB2 PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.022e-34
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K+ AS D          ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   22 KKTASTDGAKKRTKARKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_EUPCR (Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.335e-34
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ET+ +YI++VLKQVHP+ G+S K+M IMNSFINDIFEK+A EAS+L RYNKK T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   24 ETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYNKKHTLSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 113          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_AJECA (Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.335e-34
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K  A+G           ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   30 KTTAAGGEKKKRSKTRKETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 136          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1_CANAL (Histone H2B.1 OS=Candida albicans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.335e-34
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K+ AS D          ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   22 KKTASTDGAKKRTKARKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_NEOFI (Histone H2B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htb1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  207 AASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            AA+GD          ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   35 AATGDKKKRGKTRK-ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_LODEL (Histone H2B OS=Lodderomyces elongisporus GN=HTB1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K A+S D          ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++RE+QTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   23 KTASSTDGGKKRTKARKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREVQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_ASPFU (Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  207 AASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            AA+GD          ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   35 AATGDKKKRGKTRK-ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_ROSNE (Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.277e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   45 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 134          
The following BLAST results are available for this feature:
BLAST of CF834782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_CHAGB1.022e-3470.09Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV... [more]
H2BE1_PSAMI1.022e-3478.89Histone H2B.1, embryonic OS=Psammechinus miliaris ... [more]
H2B2_CANAL1.022e-3468.22Histone H2B.2 OS=Candida albicans GN=HTB2 PE=3 SV=... [more]
H2B_EUPCR1.335e-3476.67Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1[more]
H2B_AJECA1.335e-3468.22Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 ... [more]
H2B1_CANAL1.335e-3468.22Histone H2B.1 OS=Candida albicans GN=HTB1 PE=3 SV=... [more]
H2B_NEOFI1.743e-3470.48Histone H2B OS=Neosartorya fischeri (strain ATCC 1... [more]
H2B_LODEL1.743e-3467.29Histone H2B OS=Lodderomyces elongisporus GN=HTB1 P... [more]
H2B_ASPFU1.743e-3470.48Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 ... [more]
H2B_ROSNE2.277e-3477.78Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834782 ID=CF834782; Name=CF834782; organism=Citrus sinensis; type=EST; length=590bp
CTTTACTCTTCCCTTTAAGAGGNAAAAGGAAAAGAAAATATCTACAAGCC
TCCCCTTTATCTCTCTCTACCAAAGCGAAATTAATGGCACCAAAGGCGGA
GAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGG
CCGAGAAGGCGCCGGGGGAGAAGAAGCCGAAGGCCGGCAACAAGCTTCCC
AAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCAT
CGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCG
ATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAAC
GATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAA
TAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTG
TACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCT
GTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGA
ATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGC
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