CF834782

Overview
NameCF834782
Unique NameCF834782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_EMENI (Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.277e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: HSB1_PICST (Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K+ AS            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   23 KKTASATDSKKRTKTRKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2BS1_STRPU (Histone H2B.1, sperm OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 68/90 (75.56%), Postives = 83/90 (92.22%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y IYI+KVLKQVHPD GISS+ M IMNSF+ND+FE++A EASRL +YN++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   50 ESYGIYIYKVLKQVHPDTGISSRGMSIMNSFVNDVFERVAAEASRLTKYNRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 139          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B2_PICST (Histone H2B.2 OS=Pichia stipitis GN=HTB2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K+ AS            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   23 KKTASSTDAKKRTKTRKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B2_ASHGO (Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K  AS D          ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   18 KTTASTDASKKRTKTRKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 124          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1_DEBHA (Histone H2B.1 OS=Debaryomyces hansenii GN=HTB1 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.624e-34
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K+ AS            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   22 KKTASATGTKKRSKTRKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIAGEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_USTMA (Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 8.651e-34
Identity = 68/90 (75.56%), Postives = 82/90 (91.11%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ETY  YI++VLKQVHPD GIS+KAM I+NSF+ DIFE++A EAS+LA YNKK TI+SREIQTAVRL+LPGEL+KHA+SEGTK+VTKF+SS
Sbjct:   52 ETYSTYIYRVLKQVHPDTGISNKAMAILNSFVQDIFERIATEASKLASYNKKSTISSREIQTAVRLILPGELSKHAISEGTKSVTKFSSS 141          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B2_DEBHA (Histone H2B.2 OS=Debaryomyces hansenii GN=HTB2 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 8.651e-34
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIAGEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 127          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1_SCHPO (Histone H2B-alpha OS=Schizosaccharomyces pombe GN=htb1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 8.651e-34
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQTAVRL+LPGELAKHAV+EGTK+VTK++SS
Sbjct:   35 ETYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLILPGELAKHAVTEGTKSVTKYSSS 124          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1_ASHGO (Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 8.651e-34
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K ++S D          ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   23 KTSSSVDASKKRTKTRKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129          
The following BLAST results are available for this feature:
BLAST of CF834782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_EMENI2.277e-3477.78Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV... [more]
HSB1_PICST3.883e-3467.29Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1[more]
H2BS1_STRPU3.883e-3475.56Histone H2B.1, sperm OS=Strongylocentrotus purpura... [more]
H2B2_PICST3.883e-3467.29Histone H2B.2 OS=Pichia stipitis GN=HTB2 PE=3 SV=1[more]
H2B2_ASHGO3.883e-3467.29Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3[more]
H2B1_DEBHA6.624e-3467.29Histone H2B.1 OS=Debaryomyces hansenii GN=HTB1 PE=... [more]
H2B_USTMA8.651e-3475.56Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3[more]
H2B2_DEBHA8.651e-3476.67Histone H2B.2 OS=Debaryomyces hansenii GN=HTB2 PE=... [more]
H2B1_SCHPO8.651e-3476.67Histone H2B-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2B1_ASHGO8.651e-3466.36Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834782 ID=CF834782; Name=CF834782; organism=Citrus sinensis; type=EST; length=590bp
CTTTACTCTTCCCTTTAAGAGGNAAAAGGAAAAGAAAATATCTACAAGCC
TCCCCTTTATCTCTCTCTACCAAAGCGAAATTAATGGCACCAAAGGCGGA
GAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGG
CCGAGAAGGCGCCGGGGGAGAAGAAGCCGAAGGCCGGCAACAAGCTTCCC
AAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCAT
CGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCG
ATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAAC
GATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAA
TAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTG
TACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCT
GTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGA
ATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGC
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