CF834782

Overview
NameCF834782
Unique NameCF834782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834782_ssr222 microsatellite CF834782_ssr222:222..233. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:384..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.626e-40
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 3
Query:  246 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            S+ETYKIYIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 6.185e-40
Identity = 84/109 (77.06%), Postives = 93/109 (85.32%), Query Frame = 3
Query:  192 KLPKEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 518
            K PK    G+        ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   49 KEPK--GDGEKKDKKKKSAVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 8.078e-40
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = 3
Query:  246 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 518
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 8.078e-40
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = 3
Query:  246 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 518
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 8.078e-40
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = 3
Query:  246 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 518
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.378e-39
Identity = 84/107 (78.50%), Postives = 93/107 (86.92%), Query Frame = 3
Query:  204 EAASGDXXXXXXXXS-IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            +AA GD        +  ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   49 DAAEGDKKKKKAKVAKSETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.800e-39
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.875e-38
Identity = 85/109 (77.98%), Postives = 88/109 (80.73%), Query Frame = 3
Query:  192 KLPKEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 518
            KLPK+   G            T KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTKFTS
Sbjct:   11 KLPKKD-KGQKDIKRKKKESYTVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
The following BLAST results are available for this feature:
BLAST of CF834782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_WHEAT3.626e-4090.22Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B2_CHLRE6.185e-4077.06Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B4_CHLRE8.078e-4087.91Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE8.078e-4087.91Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE8.078e-4087.91Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA1.378e-3978.50Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA1.800e-3988.89Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA9.875e-3877.98Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B3B_MOUSE1.684e-3783.33Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN1.684e-3783.33Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834782 ID=CF834782; Name=CF834782; organism=Citrus sinensis; type=EST; length=590bp
CTTTACTCTTCCCTTTAAGAGGNAAAAGGAAAAGAAAATATCTACAAGCC
TCCCCTTTATCTCTCTCTACCAAAGCGAAATTAATGGCACCAAAGGCGGA
GAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGG
CCGAGAAGGCGCCGGGGGAGAAGAAGCCGAAGGCCGGCAACAAGCTTCCC
AAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCAT
CGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCG
ATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAAC
GATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAA
TAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTG
TACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCT
GTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGA
ATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGC
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