CF834782

Overview
NameCF834782
Unique NameCF834782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834782_ssr222 microsatellite CF834782_ssr222:222..233. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:384..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.873e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_CHITH (Histone H2B OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 79/107 (73.83%), Postives = 89/107 (83.18%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            ++A S D          E+Y IYIFKVLKQVHPD G+SSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   18 QKAISKDDKKKRRHKRKESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1K_MOUSE (Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 3
Query:  201 KEAASGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            K A SGD          E+Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   17 KAARSGDKKRKRRRK--ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 121          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CF834782 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3
Query:  252 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123          
The following BLAST results are available for this feature:
BLAST of CF834782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1M_HUMAN2.873e-3783.33Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]
H2B1H_MOUSE2.873e-3783.33Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ... [more]
H2B1H_HUMAN2.873e-3783.33Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]
H2B1D_HUMAN2.873e-3783.33Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ... [more]
H2B1C_MOUSE2.873e-3783.33Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h... [more]
H2B_CHITH3.753e-3773.83Histone H2B OS=Chironomus thummi thummi PE=3 SV=2[more]
H2B1K_MOUSE3.753e-3782.22Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk ... [more]
H2B_PATGR4.901e-3774.77Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B1J_HUMAN4.901e-3783.33Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]
H2B_SALTR6.401e-3783.33Histone H2B OS=Salmo trutta PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834782 ID=CF834782; Name=CF834782; organism=Citrus sinensis; type=EST; length=590bp
CTTTACTCTTCCCTTTAAGAGGNAAAAGGAAAAGAAAATATCTACAAGCC
TCCCCTTTATCTCTCTCTACCAAAGCGAAATTAATGGCACCAAAGGCGGA
GAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGG
CCGAGAAGGCGCCGGGGGAGAAGAAGCCGAAGGCCGGCAACAAGCTTCCC
AAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCAT
CGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCG
ATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAAC
GATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAA
TAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTG
TACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCT
GTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGA
ATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGC
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