CF834784

Overview
NameCF834784
Unique NameCF834784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1083 contig Csv1_Contig1083:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_ECO57 (L-tartrate/succinate antiporter OS=Escherichia coli O157:H7 GN=ttdT PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 63/194 (32.47%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  +++W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P A +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTMVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_SHIFL (L-tartrate/succinate antiporter OS=Shigella flexneri GN=ttdT PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 63/194 (32.47%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  +++W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P A +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTMVMVTLIVVFYLLRYFFASATAYTCAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_ECOL5 (L-tartrate/succinate antiporter OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ttdT PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 62/194 (31.96%), Postives = 104/194 (53.61%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  +++W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P   +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTIVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTVDYWRLGAIFGLIFLVLLVITGLLW 481          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_ECOUT (L-tartrate/succinate antiporter OS=Escherichia coli (strain UTI89 / UPEC) GN=ttdT PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 62/194 (31.96%), Postives = 103/194 (53.09%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  ++ W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P   +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIICWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTIVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTVDYWRLGAIFGLIFLVLLVITGLLW 481          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_ECOL6 (L-tartrate/succinate antiporter OS=Escherichia coli O6 GN=ttdT PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 62/194 (31.96%), Postives = 103/194 (53.09%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  ++ W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P   +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIICWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTIVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTVDYWRLGAIFGLIFLVLLVITGLLW 481          
The following BLAST results are available for this feature:
BLAST of CF834784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TTDT_ECO571.495e-2232.47L-tartrate/succinate antiporter OS=Escherichia col... [more]
TTDT_SHIFL3.330e-2232.47L-tartrate/succinate antiporter OS=Shigella flexne... [more]
TTDT_ECOL54.349e-2231.96L-tartrate/succinate antiporter OS=Escherichia col... [more]
TTDT_ECOUT7.418e-2231.96L-tartrate/succinate antiporter OS=Escherichia col... [more]
TTDT_ECOL67.418e-2231.96L-tartrate/succinate antiporter OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834784 ID=CF834784; Name=CF834784; organism=Citrus sinensis; type=EST; length=585bp
TCTGCTTCTTCCTTTAAGGCTCTGGGTTTTTGGTGGTAGACTGAATGTGG
ACCCTGTTACTGCTGCAATTCTTGGATTGTCTATCCTCCTTGTCACTGGG
GTTGTGACTTGGAAGGAGTGCTTACCTGAATCCGTTGCTTGGGATACTCT
GACATGGTTTGCTGCTCTTATTGCTATGGCTGGATATCTCAACAAATACG
GTCTTATCACCTGGTTCAGCCAAACTGTGGTCAAGTTTGTTGGTGGATTG
GGTCTTTCATGGCAGCTATCTTTTGGCATTCTGATTCTTCTCTATTTCTA
CTCCCACTACTTCTTTGCAAGTGGAGCTGCTCACATCGGTGCCATGTTTA
CAGCCTTCTTATCTGTTGCTAGTGCTCTAGGCTGTCCACCATACTTTGTA
GCCATGGTGCTCGCCTTCTTTTCCAATCTCATGGGTGGTCTCACCCACTA
TGGCATCGGGTCAGCACCTGTTTTCTATGGTGCCAACTACGTTCCCCTTG
CCAAATGGTGGGGATACGGATTCATCGTATCTATCGTCAACATCATTATC
TGGCTTGGAGTTGGTGGTGTTTGGTGGAAATTCAT
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