CF834785

Overview
NameCF834785
Unique NameCF834785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: CP1A2_MOUSE (Cytochrome P450 1A2 OS=Mus musculus GN=Cyp1a2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 45/162 (27.78%), Postives = 75/162 (46.30%), Query Frame = -2
Query:  201 KKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFNPERFLDNCSSF--KGNDFHFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPDEQREEDLDVDESNGITI 680
            +K+ EE+  + G           ++ YL+A I E                T+D  + G++IP +  + IN W +  D   W++P  F PERFL N +S   K      + FG G+R C G   A   V L L+ LL   ++++P   +   +D+  + G+T+
Sbjct:  339 RKIHEELDTVVGRDRQPRLSDRPQLPYLEAFILEIYRYTSFVPFTIPHSTTRDTSLNGFHIPKERCIYINQWQVNHDEKQWKDPFVFRPERFLTNNNSAIDKTQSEKVMLFGLGKRRCIGEIPAKWEVFLFLAILLQHLEFSVPPGVK---VDLTPNYGLTM 497          
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: CP1A2_CALJA (Cytochrome P450 1A2 OS=Callithrix jacchus GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 45/162 (27.78%), Postives = 75/162 (46.30%), Query Frame = -2
Query:  201 KKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFNPERFL--DNCSSFKGNDFHFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPDEQREEDLDVDESNGITI 680
            +K+Q+E+  + G           ++ YL+A I ET               T+D  + G+ IP +  V IN W +  DP  W +P +F PERFL     +  K      + FG G+R C G       V L L+ LL + ++++P   +   +D+  + G+T+
Sbjct:  341 RKIQKELDTVIGRGRRPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTTLKGFYIPKECCVFINQWQVNHDPQLWGDPSEFRPERFLTAKGTALNKPLSEKILLFGLGKRRCIGEVLGKWEVFLFLAILLQQLEFSVPPGVQ---IDLTPTYGLTM 499          
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: CP17A_ONCMY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oncorhynchus mykiss GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 41/146 (28.08%), Postives = 66/146 (45.21%), Query Frame = -2
Query:  273 HSKTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFNPERFLDNCSSFKGNDF-----HFIPFGAGRRGCPGATFAIAIVELVLSNLLYK 695
            H +  +++QEE+  + G            + YL+A I+E               A  D  +G + +   +R+IIN W++  D   W+ PE F+P RFL+     +G         ++PFGAG R C G   A   + L LS +L +
Sbjct:  328 HPQVQQRIQEELDSVVGGDRTPQLSDRGSLPYLEATIREVLRIRPVAPLLIPHVAQTDTSIGKFTVRKGARIIINLWSLHHDEKEWKNPEMFDPGRFLNE----EGTGLCIPSPSYLPFGAGVRVCLGEALAKMEIFLFLSWILQR 469          
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = -2
Query:  264 HSKTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASW-EEPEKFNPERFLDNCSSFKGNDFHFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDW 695
            H +   K+QEEV R       I  DH+ K+ YL+ V+KET            R+  ++  + G N      + ++ W +  +P  W E+ E F PER+ +       ++  +IPFG+G R C G   A    +++L+ +L ++ +
Sbjct:  343 HPEIQTKLQEEVDRECPDPE-IFFDHLSKLKYLECVMKETLRLYPLGTTANTRKCMRETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQKILLAQILKEYSF 486          
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: CP2F2_RAT (Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 53/173 (30.64%), Postives = 79/173 (45.66%), Query Frame = -2
Query:  183 HSKTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFNPERFLDNCSSFKGNDFHFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPDEQREEDLDVDE-SNGI-TIPRKFPL 695
            + K   +VQEE+  + G       +    M Y  AVI E              +  +D    G+ IP  + VI     +  D   ++ P++FNPE FLD   SFK +   F+PF AGRR C G   A   + + L+++L  F   L      ED+D+   S+G+  +PR F L
Sbjct:  317 YPKVQARVQEEIDCVVGRSRMPTLEDRASMPYTDAVIHEVQRFADVIPMNLPHRVIRDTPFRGFLIPKGTDVITLLNTVHYDSDQFKTPQEFNPEHFLDANQSFKKSP-AFMPFSAGRRLCLGEPLARMELFIYLTSILQNF--TLHPLVEPEDIDLTPLSSGLGNLPRPFQL 486          
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: CP2CN_RAT (Cytochrome P450 2C23 OS=Rattus norvegicus GN=Cyp2c23 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 47/174 (27.01%), Postives = 75/174 (43.10%), Query Frame = -2
Query:  174 HSKTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFNPERFLDNCSSFKGNDFHFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPDEQREEDLDVDESNGITIPRKFPLVVV 695
            + +   KV EE+ R+ G     +     K+ Y  AV+ E                 +D +   Y IP  + V+    ++  D   +  PEKF+P  FLD    FK  D+ F+PF  G+R C G + A   + L  + LL KF      E ++ D+    +  I +P  + L +V
Sbjct:  320 YPEVQAKVHEELDRVIGRHQPPSMKDKMKLPYTDAVLHEIQRYITLLPSSLPHAVVQDTKFRDYVIPKGTTVLPMLSSVMLDQKEFANPEKFDPGHFLDKNGCFKKTDY-FVPFSLGKRACVGESLARMELFLFFTTLLQKFSLKTLVEPKDLDIKPITTGIINLPPPYKLCLV 492          
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: CP2BF_RAT (Cytochrome P450 2B15 OS=Rattus norvegicus GN=Cyp2b15 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 48/166 (28.92%), Postives = 72/166 (43.37%), Query Frame = -2
Query:  183 KKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFNPERFLDNCSSFKGNDFHFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALPDEQREEDLDVDESNGITIPRKFPL 680
            +KVQ+E+ ++ GS      D   KM Y  AVI E              + T D    GY +P  + V     +   DP  ++ P+ FNPE FLD   + K ++  F+PF  G+R C G   A   + +  + +L  F  A P    + DL    S    IP  + +
Sbjct:  323 EKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSE-AFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQI 487          
BLAST of CF834785 vs. ExPASy Swiss-Prot
Match: CP1A1_HUMAN (Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 44/146 (30.14%), Postives = 65/146 (44.52%), Query Frame = -2
Query:  255 KTMKKVQEEVRRIAGSKSYINEDHIEKMFYLKAVIKETXXXXXXXXXXXXRQATKDVQVGGYNIPAKSRVIINAWAIGRDPASWEEPEKFNPERFLDNCSSF-KGNDFHFIPFGAGRRGCPGATFAIAIVELVLSNLLYKFDWALP 689
            +  +K+QEE+  + G            + Y++A I ET               T+D  + G+ IP    V +N W I  D   W  P +F PERFL    +  K      I FG G+R C G T A   V L L+ LL + ++++P
Sbjct:  338 RVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVP 483          
The following BLAST results are available for this feature:
BLAST of CF834785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
CP1A2_MOUSE6.359e-1127.78Cytochrome P450 1A2 OS=Mus musculus GN=Cyp1a2 PE=1... [more]
CP1A2_CALJA6.359e-1127.78Cytochrome P450 1A2 OS=Callithrix jacchus GN=CYP1A... [more]
CP17A_ONCMY6.359e-1128.08Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oncorh... [more]
C13A6_CAEEL6.359e-1127.59Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
CP2F2_RAT8.306e-1130.64Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2... [more]
CP2CN_RAT8.306e-1127.01Cytochrome P450 2C23 OS=Rattus norvegicus GN=Cyp2c... [more]
CP2BF_RAT8.306e-1128.92Cytochrome P450 2B15 OS=Rattus norvegicus GN=Cyp2b... [more]
CP1A1_HUMAN8.306e-1130.14Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834785 ID=CF834785; Name=CF834785; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTAGACAAAAAAGGTTAACGAAGCTCTTATTTATA
AATTATTTAGTGAAGAAAAGGGTAGAAACACCTCAAATGGTATAACCATT
CACCAAATATTTTAAGATAGATTTTTACAGACATTTCATTATCCCTTTGG
CTCTAGAAACGATGAGGAGTCGCAACAACTACAAGCGGGAACTTCCTGGG
AATGGTTATACCATTTGATTCATCGACATCCAAGTCCTCCTCTCTTTGTT
CATCTGGCAACGCCCAATCAAACTTGTACAATAGGTTTGACAATACAAGC
TCAACAATTGCAATAGCAAATGTAGCTCCAGGACACCCCCTTCTACCAGC
TCCGAAAGGAATGAAATGAAAATCATTCCCTTTGAAACTTGAACAGTTGT
CCAGGAACCTCTCAGGGTTAAATTTCTCTGGTTCTTCCCATGAAGCAGGA
TCTCTCCCTATTGCCCACGCATTGATAATAACTCTGGATTTGGCAGGAAT
GTTGTAGCCTCCTACCTGGACATCTTTTGTTGCTTGTCGCGGAAGCAGCA
ATGGAACTGGAGGGTGTAGTCGTAAAGTCTCCTTTATCACTGCCTTGAGG
TAAAACATTTTCTCTATATGATCTTCATTAATGTAAGATTTGCTTCCAGC
AATCCGTCTCACCTCTTCCTGCACCTTTTTCATAGTTTTGCTATGC
back to top