CF834786

Overview
NameCF834786
Unique NameCF834786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:382..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.146e-75
Identity = 134/150 (89.33%), Postives = 140/150 (93.33%), Query Frame = -2
Query:  139 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVPGK 588
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAW YATNFVPGK
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.336e-72
Identity = 130/167 (77.84%), Postives = 145/167 (86.83%), Query Frame = -2
Query:  145 LEVIPCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVP 645
            LE+I  RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+ +AT F P
Sbjct:   85 LELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.860e-69
Identity = 134/168 (79.76%), Postives = 143/168 (85.12%), Query Frame = -2
Query:  142 LEVIPCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVPG 645
            LEVI  R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGE+TDPLYP GSFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA    TNFVPG
Sbjct:  101 LEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.860e-69
Identity = 130/168 (77.38%), Postives = 143/168 (85.12%), Query Frame = -2
Query:  145 LEVIPCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVP 645
            LEVI  RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+  AT F P
Sbjct:   87 LEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.643e-66
Identity = 132/171 (77.19%), Postives = 143/171 (83.63%), Query Frame = -2
Query:  142 LEVIPCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGELTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVPG 645
            LEVI  RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:   95 LEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.643e-66
Identity = 132/171 (77.19%), Postives = 143/171 (83.63%), Query Frame = -2
Query:  142 LEVIPCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGELTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVPG 645
            LEVI  RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:   98 LEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.144e-64
Identity = 123/169 (72.78%), Postives = 140/169 (82.84%), Query Frame = -2
Query:  145 LEVIPCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVP 645
            LE+I  R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+ YAT F P
Sbjct:  104 LELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.636e-61
Identity = 121/171 (70.76%), Postives = 136/171 (79.53%), Query Frame = -2
Query:  142 LEVIPCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTD--PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVPG 645
            +E+I  RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G L D   LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+  AT F PG
Sbjct:   82 IELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.308e-60
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = -2
Query:  139 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVPGK 486
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of CF834786 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.807e-60
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = -2
Query:  139 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGELTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWPYATNFVPGK 486
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CF834786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB22_PINSY7.146e-7589.33Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2_CHLRE4.336e-7277.84Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO5.860e-6979.76Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLMO5.860e-6977.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC4.643e-6677.19Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU4.643e-6677.19Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNSA1.144e-6472.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE2.636e-6170.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2D_SOLLC1.308e-6095.69Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.807e-6094.83Chlorophyll a-b binding protein 1C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834786 ID=CF834786; Name=CF834786; organism=Citrus sinensis; type=EST; length=646bp
GTTTTTTTTTCTTTTTAGATCAAATTGAAGCATTTTATAAATAATCACAA
CTCCAATTAAAGCTTCCATGAGCTCACAACAGATTTACATGATATCCAAG
AAACCGAAAAGAGAAAAACTCTTATCAACCGAAGCTCACTTTCCGGGGAC
AAAGTTGGTGGCGTAGGGCCAGGCATTGTTATTGACAGGGTCAGCCAAGT
GGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAATGGCCTGAACG
AAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTT
AACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAAACCCAATGGAT
CAAAGCTGCCACCTGGGTACAATGGGTCAGTGAGTTCACCGAGCGGCCCT
CCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAGACCACCTGGCAAGC
CCAGATGGCCAAGATGCTCTGAGCGTGGATCAGGCTTGGGTTCCCCAAGT
AGTCAAGCCCGCCCTCGCTGAAGATCTGGGCCCCCGCCTTGAACCACACG
GCCTCACCGAACTTGACTCCGTTGCGGGCCAAGAGCTCCGGGAAGACGCA
TCCAAGAGCTCCCAACATGGCCCATCTGCAGGGGATGACTTCGAGT
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