CF834796

Overview
NameCF834796
Unique NameCF834796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.932e-55
Identity = 104/135 (77.04%), Postives = 118/135 (87.41%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.054e-55
Identity = 104/135 (77.04%), Postives = 118/135 (87.41%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D RM+ +I++FY+  IEE+P NVADL+
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.182e-54
Identity = 104/135 (77.04%), Postives = 118/135 (87.41%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.182e-54
Identity = 104/135 (77.04%), Postives = 118/135 (87.41%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  287 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.913e-53
Identity = 102/132 (77.27%), Postives = 115/132 (87.12%), Query Frame = -2
Query:  288 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVA
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVA 395          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.488e-53
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            +TQ+VIF NTRRKVDWLT+++  RD TVS+ HGDMDQ  RD +M EFR+GSSR+LITTDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGV+INFVT DD RM+ +I++FYN  IEE+P N+ADL+
Sbjct:  258 VTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 7.174e-52
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIF NTRRKVD LT +M   + TVSA HGDM+Q  R++IM++FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINF+T DD R+L DI++FY+  IEE+P+N+ADL+
Sbjct:  269 ITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADLI 403          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF +TRRKVDWLT ++  R  TVSA HGDM Q  R++IM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFV+ +D+ ML +I+ +YN  +EE+P NVADL+
Sbjct:  267 ITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIETYYNTQVEEMPLNVADLI 401          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
The following BLAST results are available for this feature:
BLAST of CF834796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_ASPNC6.932e-5577.04ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_SCLS19.054e-5577.04ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_NEOFI1.182e-5477.04ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_EMENI1.182e-5477.04ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_ASPFU2.913e-5377.27ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_SCHPO6.488e-5372.59ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_DROME7.174e-5273.33Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_CRYNE2.087e-5171.85ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
FAL1_NEOFI4.650e-5173.33ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI4.650e-5173.33ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834796 ID=CF834796; Name=CF834796; organism=Citrus sinensis; type=EST; length=684bp
AATTGATACGAAAGGACATAAAATACAAAGACCTCCCTTTAACAAAAATT
TCAATAATTATAAACCCACCACAGTGCCTCTTGCAAATGTGCATGACCCA
TATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATTTAAGACACT
ATACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGGAGAAAAGAA
CCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTTCTTGCCTCG
ACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCAACGTTTGAA
GGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATCAAAAAGCAT
TCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCTTTCTTCCAA
ATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGTTGAGTCGGC
AGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAATACCACGAGC
CAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGCGAAATTCAC
GCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGAGTGGCAGAG
ACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTCGACCTTTCG
CCGAGTGTTCACAAAGATGACACTCTGGGTTATG
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