CF834796

Overview
NameCF834796
Unique NameCF834796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 44/114 (38.60%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  330 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 671
            +IFV  +   D L  ++    +   + HG  +Q  RD  + +F+SG   VLI T + ARG+DV+ + LV+N+D P   E+Y+HR+GR+GR G+KG A+ F+  D ER+  +I +
Sbjct:  668 LIFVERQESADSLLKELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISR 781          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 671
            ++FV T+R  D L D + SR H  ++ HGD  Q  R+  +  F+SG + +L+ T + ARG+D+  V+ VI YDLP     Y HRIGR+GR G  G +  F  R +  +  D+ +      +E+P  + ++
Sbjct:  426 LVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQEVPQWLVEI 555          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 43/131 (32.82%), Postives = 80/131 (61.07%), Query Frame = -2
Query:  282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSNVADL 671
            +IF   ++ VD + + +  +     + HGD  Q+ R+  ++ FR G   VL+ TD+ ++G+D  ++  VIN+D+P + ENY+HRIGR+GR G KGVA  F+ +++ E +L D++       +++P  + ++
Sbjct:  478 LIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEI 608          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DBP10_GIBZE (ATP-dependent RNA helicase DBP10 OS=Gibberella zeae GN=DBP10 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 43/116 (37.07%), Postives = 72/116 (62.07%), Query Frame = -2
Query:  327 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 674
            ++IF  T+  V++L + +      VS  +G +DQ  R I + +FR G + +L+ TD+ ARGID+  ++ VIN+D P QP+ ++HR+GR+ R G++G + + V   D   L D+Q F
Sbjct:  358 TIIFTATKHHVEYLANLLIYAGFAVSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGWSYSLVRDTDAPYLIDLQLF 473          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = -2
Query:  285 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 671
            +IF  T+   + L+      + + +A HGD++QN R   +  F++G   +L+ TD+ ARG+D+  V +V+NYD+P   ++Y+HR+GR+ R GR G +I+ V++ D  ++  I++   V+ ++LP    D
Sbjct:  325 IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE---VLGKKLPKESVD 450          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = -2
Query:  372 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 677
            ++++F NT+   + + D +++  H V    GD+ QN R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+ G +I+F
Sbjct:  255 KAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 50/154 (32.47%), Postives = 83/154 (53.90%), Query Frame = -2
Query:  213 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVADLL*GGSVFVSLSRQEGVS*FCKYC 671
            +IF   +  VD + + +  +     A HG  DQ  RD  +  F++G   VL+ TD+ ++G+D   +  VINYD+P + ENY+HRIGR+GR G+ G+A  F+ ++  E  L D++       + +P  +A+L        +++   GV   C YC
Sbjct:  352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVK-GCAYC 504          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = -2
Query:  279 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL-PSNVADLL 677
            ++++F  T+R  D ++  + S      A HGD+ Q+ R+  +  FR G   VL+ TD+ +RG+D+  V LVI+Y+LP  PE ++HR GR+GR G++G AI   T   +R +  +++      E + P  V DLL
Sbjct:  353 KTIVFTQTKRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLL 485          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: PRP28_PHANO (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Phaeosphaeria nodorum GN=PRP28 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = -2
Query:  330 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 671
            ++FVN +R  D +   +++   +    HG   Q  R+  + + R     VL+ TDL  RGID+  VSLV+N+++ T  E+Y HRIGR+GR G+ GVAI F   +D  +L+D+++
Sbjct:  599 IVFVNIKRNCDAIARDIKNMGFSSVTLHGSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFWGNEDADVLYDLKQ 712          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = -2
Query:  345 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 671
            ++FV +  +   L  ++      V   H +  Q  RD  +  FR+G   VLI T LLARGID + V+LVINYD PT    Y+HRIGR+GR G KG AI F T DD+ +L
Sbjct:  416 LVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 524          
The following BLAST results are available for this feature:
BLAST of CF834796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP5_YARLI1.783e-1838.60Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DED1_CRYNE1.783e-1835.38ATP-dependent RNA helicase ded1 OS=Cryptococcus ne... [more]
DDX41_DICDI1.783e-1832.82Probable ATP-dependent RNA helicase ddx41 OS=Dicty... [more]
DBP10_GIBZE1.783e-1837.07ATP-dependent RNA helicase DBP10 OS=Gibberella zea... [more]
RRP3_YEAST2.329e-1833.33ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
RHLB_PSEA62.329e-1841.18ATP-dependent RNA helicase rhlB OS=Pseudoalteromon... [more]
RH43_ARATH2.329e-1832.47Putative DEAD-box ATP-dependent RNA helicase 43 OS... [more]
RH3_ARATH2.329e-1835.82DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
PRP28_PHANO2.329e-1837.72Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX52_HUMAN2.329e-1844.95Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834796 ID=CF834796; Name=CF834796; organism=Citrus sinensis; type=EST; length=684bp
AATTGATACGAAAGGACATAAAATACAAAGACCTCCCTTTAACAAAAATT
TCAATAATTATAAACCCACCACAGTGCCTCTTGCAAATGTGCATGACCCA
TATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATTTAAGACACT
ATACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGGAGAAAAGAA
CCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTTCTTGCCTCG
ACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCAACGTTTGAA
GGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATCAAAAAGCAT
TCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCTTTCTTCCAA
ATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGTTGAGTCGGC
AGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAATACCACGAGC
CAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGCGAAATTCAC
GCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGAGTGGCAGAG
ACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTCGACCTTTCG
CCGAGTGTTCACAAAGATGACACTCTGGGTTATG
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