CF834796
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18 Identity = 44/114 (38.60%), Postives = 70/114 (61.40%), Query Frame = -2 Query: 330 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 671 +IFV + D L ++ + + HG +Q RD + +F+SG VLI T + ARG+DV+ + LV+N+D P E+Y+HR+GR+GR G+KG A+ F+ D ER+ +I + Sbjct: 668 LIFVERQESADSLLKELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISR 781
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18 Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = -2 Query: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 671 ++FV T+R D L D + SR H ++ HGD Q R+ + F+SG + +L+ T + ARG+D+ V+ VI YDLP Y HRIGR+GR G G + F R + + D+ + +E+P + ++ Sbjct: 426 LVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFFNRGNTNIGKDLIELLKEANQEVPQWLVEI 555
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18 Identity = 43/131 (32.82%), Postives = 80/131 (61.07%), Query Frame = -2 Query: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSNVADL 671 +IF ++ VD + + + + + HGD Q+ R+ ++ FR G VL+ TD+ ++G+D ++ VIN+D+P + ENY+HRIGR+GR G KGVA F+ +++ E +L D++ +++P + ++ Sbjct: 478 LIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEI 608
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DBP10_GIBZE (ATP-dependent RNA helicase DBP10 OS=Gibberella zeae GN=DBP10 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18 Identity = 43/116 (37.07%), Postives = 72/116 (62.07%), Query Frame = -2 Query: 327 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 674 ++IF T+ V++L + + VS +G +DQ R I + +FR G + +L+ TD+ ARGID+ ++ VIN+D P QP+ ++HR+GR+ R G++G + + V D L D+Q F Sbjct: 358 TIIFTATKHHVEYLANLLIYAGFAVSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGWSYSLVRDTDAPYLIDLQLF 473
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = -2 Query: 285 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 671 +IF T+ + L+ + + +A HGD++QN R + F++G +L+ TD+ ARG+D+ V +V+NYD+P ++Y+HR+GR+ R GR G +I+ V++ D ++ I++ V+ ++LP D Sbjct: 325 IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE---VLGKKLPKESVD 450
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = -2 Query: 372 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 677 ++++F NT+ + + D +++ H V GD+ QN R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+ G +I+F Sbjct: 255 KAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 50/154 (32.47%), Postives = 83/154 (53.90%), Query Frame = -2 Query: 213 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVADLL*GGSVFVSLSRQEGVS*FCKYC 671 +IF + VD + + + + A HG DQ RD + F++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+ ++ E L D++ + +P +A+L +++ GV C YC Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVK-GCAYC 504
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = -2 Query: 279 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL-PSNVADLL 677 ++++F T+R D ++ + S A HGD+ Q+ R+ + FR G VL+ TD+ +RG+D+ V LVI+Y+LP PE ++HR GR+GR G++G AI T +R + +++ E + P V DLL Sbjct: 353 KTIVFTQTKRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLL 485
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: PRP28_PHANO (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Phaeosphaeria nodorum GN=PRP28 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = -2 Query: 330 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 671 ++FVN +R D + +++ + HG Q R+ + + R VL+ TDL RGID+ VSLV+N+++ T E+Y HRIGR+GR G+ GVAI F +D +L+D+++ Sbjct: 599 IVFVNIKRNCDAIARDIKNMGFSSVTLHGSKTQEQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAITFWGNEDADVLYDLKQ 712
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = -2 Query: 345 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 671 ++FV + + L ++ V H + Q RD + FR+G VLI T LLARGID + V+LVINYD PT Y+HRIGR+GR G KG AI F T DD+ +L Sbjct: 416 LVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 524 The following BLAST results are available for this feature:
BLAST of CF834796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834796 ID=CF834796; Name=CF834796; organism=Citrus sinensis; type=EST; length=684bpback to top |