CF834796

Overview
NameCF834796
Unique NameCF834796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.640e-46
Identity = 90/135 (66.67%), Postives = 108/135 (80.00%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NTRRKVDWL+ KM+  +  VS+ HG+M Q  RD +M EFR GSSRVLITTD+ ARGID+  +SLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R L DI++FY+  I+E+P  + D+L
Sbjct:  263 ITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDML 397          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.448e-46
Identity = 90/135 (66.67%), Postives = 112/135 (82.96%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NT+ KV+WLTD+M+  + TV A HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN VT++D   L DI++FY + I+E+P NV D++
Sbjct:  265 ITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDIERFYRIRIKEMPVNVNDIM 399          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 90/109 (82.57%), Postives = 97/109 (88.99%), Query Frame = -2
Query:  357 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 683
            ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD
Sbjct:  264 ITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADD 372          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 87/135 (64.44%), Postives = 111/135 (82.22%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NT+ KV+WLTD+MR ++ TV + HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN +T++D   L D +K+Y+  I E+P N+ D++
Sbjct:  265 ITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM 399          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45
Identity = 90/134 (67.16%), Postives = 110/134 (82.09%), Query Frame = -2
Query:  282 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 683
            +TQ+VIF NTR KV++LT+K+R +  TVSA H D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  262 VTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.310e-45
Identity = 89/134 (66.42%), Postives = 109/134 (81.34%), Query Frame = -2
Query:  282 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 683
            +TQ+VIF NTR KV++LT+K+R +  TVSA H D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  I E+P+++  L
Sbjct:  262 VTQAVIFCNTRSKVEFLTNKLREQKFTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDKDVGMMREIEKFYSTQITEMPADIGSL 395          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.310e-45
Identity = 87/134 (64.93%), Postives = 112/134 (83.58%), Query Frame = -2
Query:  282 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 683
            +TQ+VIF NTRRKV+ LT+++R  + TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKG+AINFVT  D   + ++++FY+  IEELPS++++L
Sbjct:  261 VTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTNKDIGAMRELERFYSTQIEELPSSISEL 394          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.919e-45
Identity = 89/134 (66.42%), Postives = 108/134 (80.60%), Query Frame = -2
Query:  282 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 683
            +TQ+VIF NTR KV++LT K++  + TVSA H D+ Q  RD IM EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  262 VTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.813e-45
Identity = 88/134 (65.67%), Postives = 110/134 (82.09%), Query Frame = -2
Query:  282 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 683
            +TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q  RD IM+EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I++FY+  IEE+P+++  L
Sbjct:  262 VTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIEQFYSTQIEEMPADIGAL 395          
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44
Identity = 88/135 (65.19%), Postives = 110/135 (81.48%), Query Frame = -2
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQ+VIF NT++KVD LT++MR  + TV++ HGDM Q  R+ I++ FRSG +RVLITTD+LARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFV   D R+L DI++FY+  I+E+P N A ++
Sbjct:  271 ITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVNFASII 405          
The following BLAST results are available for this feature:
BLAST of CF834796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_USTMA2.640e-4666.67ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
FAL1_DEBHA3.448e-4666.67ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
IF4A_AJECN4.504e-4682.57ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
FAL1_PICST4.504e-4664.44ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
IF4A_CANAL1.003e-4567.16ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_LODEL1.310e-4566.42ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_KLULA1.310e-4564.93ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_DEBHA2.919e-4566.42ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_PICST3.813e-4565.67ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_DICDI1.109e-4465.19Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834796 ID=CF834796; Name=CF834796; organism=Citrus sinensis; type=EST; length=684bp
AATTGATACGAAAGGACATAAAATACAAAGACCTCCCTTTAACAAAAATT
TCAATAATTATAAACCCACCACAGTGCCTCTTGCAAATGTGCATGACCCA
TATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATTTAAGACACT
ATACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGGAGAAAAGAA
CCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTTCTTGCCTCG
ACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCAACGTTTGAA
GGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATCAAAAAGCAT
TCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCTTTCTTCCAA
ATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGTTGAGTCGGC
AGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAATACCACGAGC
CAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGCGAAATTCAC
GCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGAGTGGCAGAG
ACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTCGACCTTTCG
CCGAGTGTTCACAAAGATGACACTCTGGGTTATG
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