CF834797

Overview
NameCF834797
Unique NameCF834797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1085 contig Csv1_Contig1085:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.478e-63
Identity = 117/154 (75.97%), Postives = 133/154 (86.36%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  +WKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  243 VEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.107e-62
Identity = 117/154 (75.97%), Postives = 133/154 (86.36%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  245 VEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.107e-62
Identity = 117/154 (75.97%), Postives = 133/154 (86.36%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  268 VEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.889e-62
Identity = 116/154 (75.32%), Postives = 133/154 (86.36%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  +WKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D RM+ +I++FY+  IEE+P NVADL+
Sbjct:  245 VEKEDWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.208e-62
Identity = 112/154 (72.73%), Postives = 132/154 (85.71%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWKL+TLCDLYET+ +TQ+VIF NTRRKVDWLT+++  RD TVS+ HGDMDQ  RD +M EFR+GSSR+LITTDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGV+INFVT DD RM+ +I++FYN  IEE+P N+ADL+
Sbjct:  239 VEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.224e-61
Identity = 113/155 (72.90%), Postives = 132/155 (85.16%), Query Frame = 2
Query:    2 NVETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            NVE  EWKLETLCDLYET+ ITQ+VIF +TRRKVDWLT ++  R  TVSA HGDM Q  R++IM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFV+ +D+ ML +I+ +YN  +EE+P NVADL+
Sbjct:  247 NVEKEEWKLETLCDLYETVTITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIETYYNTQVEEMPLNVADLI 401          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.727e-61
Identity = 115/151 (76.16%), Postives = 130/151 (86.09%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 457
            VE  EWKL+TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVA
Sbjct:  245 VEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVA 395          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 2.309e-60
Identity = 112/155 (72.26%), Postives = 133/155 (85.81%), Query Frame = 2
Query:    2 NVETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            NV+   WKL TLCDLY+TL+ITQSVIF NTRRKVD LT +M   + TVSA HGDM+Q  R++IM++FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINF+T DD R+L DI++FY+  IEE+P+N+ADL+
Sbjct:  249 NVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADLI 403          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.774e-60
Identity = 112/154 (72.73%), Postives = 130/154 (84.42%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  245 VEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.774e-60
Identity = 112/154 (72.73%), Postives = 130/154 (84.42%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  245 VEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
The following BLAST results are available for this feature:
BLAST of CF834797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_PHANO8.478e-6375.97ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_NEOFI1.107e-6275.97ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_EMENI1.107e-6275.97ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_SCLS11.889e-6275.32ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_SCHPO4.208e-6272.73ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_CRYNE1.224e-6172.90ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_ASPFU2.727e-6176.16ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_DROME2.309e-6072.26Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
FAL1_NEOFI8.774e-6072.73ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI8.774e-6072.73ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834797 ID=CF834797; Name=CF834797; organism=Citrus sinensis; type=EST; length=662bp
CAATGTTGAGACGGTAGAATGGAAGCTTGAAACACTCTGTGATCTTTATG
AGACTCTGGCCATAACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAAG
GTCGACTGGCTTACGGACAAGATGCGAAGCCGTGACCATACAGTCTCTGC
CACTCATGGGGACATGGATCAGAACACCCGAGATATCATTATGCGTGAAT
TTCGCTCTGGTTCTTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCGT
GGTATTGATGTGCAGCAAGTTTCACTTGTCATAAATTATGATCTGCCGAC
TCAACCAGAAAACTACCTTCACCGTATTGGACGAAGTGGTCGATTTGGAA
GAAAGGGTGTTGCCATTAATTTTGTGACAAGGGATGATGAGAGAATGCTT
TTTGATATTCAAAAGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAAA
CGTTGCTGACCTTCTTTGAGGAGGTTCTGTTTTTGTAAGTTTGTCGAGGC
AAGAAGGGGTTTCCTGATTTTGCAAGTACTGTTTAATGTGGTGGTTCTTT
TCTCCCCTTTTTTTTTTTTTTTGGGTTCTTCTTCCTTTCCGTCTAATGTC
TTAAATTAATGTTGTTCTCAAACATGTCCGACCATTTAATCATATGGGTC
ATGCACATTTGC
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