CF834797

Overview
NameCF834797
Unique NameCF834797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1085 contig Csv1_Contig1085:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.700e-59
Identity = 111/153 (72.55%), Postives = 128/153 (83.66%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 463
            VE  +WK +TLCDLY+TL ITQ+VIF NTRRKVDWLT+KMR  + TVS+ HG+M Q  RD IM EFR G SRVLITTD+ ARGIDVQQVSLVINYDLPT  ENYLHRIGRSGRFGRKGVAINFVT DD R+L DI+++Y+  I+E+P NVA+L
Sbjct:  243 VEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDIEQYYSTQIDEMPMNVAEL 395          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.267e-58
Identity = 108/154 (70.13%), Postives = 130/154 (84.42%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            +E  +WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P NVADL+
Sbjct:  247 IEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLI 400          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: FAL1_BOTFB (ATP-dependent RNA helicase fal1 OS=Botryotinia fuckeliana (strain B05.10) GN=fal1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.161e-58
Identity = 109/154 (70.78%), Postives = 129/154 (83.77%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  +WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  245 VEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.814e-58
Identity = 108/154 (70.13%), Postives = 130/154 (84.42%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT++MRS + TVSA HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV ++D R+L DI+++Y+  I+E+P NVADL+
Sbjct:  251 VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.814e-58
Identity = 108/154 (70.13%), Postives = 130/154 (84.42%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT++MRS + TVSA HGDM Q  RD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV ++D R+L DI+++Y+  I+E+P NVADL+
Sbjct:  251 VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.829e-57
Identity = 104/154 (67.53%), Postives = 129/154 (83.77%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK +TLCDLY+TL ITQ+VIF N+RRKVDWLT+KMR  + TV++ HG+M Q  RD IM++FR G+SRVLI TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+++Y+ VI+E+P N+ D++
Sbjct:  241 VEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.389e-57
Identity = 108/155 (69.68%), Postives = 125/155 (80.65%), Query Frame = 2
Query:    2 NVETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            NV+  EWK + LCDLY  + +TQ+VIF NTRRKVD LT+KM     TVS  HGDMDQ  RD IMREFRSGSSRVLITTD+LARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R L +I+ +Y   IEE+P ++ADL+
Sbjct:  248 NVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADLI 402          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.323e-57
Identity = 108/154 (70.13%), Postives = 128/154 (83.12%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK +TLCDLY+TL ITQ+VIF NT+RKVD+L++KMRS + TVS+ HGDM Q  RD IM EFRSG SRVLITTD+ ARGIDVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  255 VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.952e-57
Identity = 107/154 (69.48%), Postives = 126/154 (81.82%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK++TL DLYETL I Q++I+ NTRR+VD LT +MR RD T S+ HGDMDQ  R++IMR+FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP  PE Y+HRIGRSGRFG+KGV+INFVT DD   L DI++ YN  IEE+P  + D+L
Sbjct:  251 VEKDEWKMDTLIDLYETLTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIERHYNTQIEEMPMGITDIL 404          
BLAST of CF834797 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.079e-57
Identity = 106/154 (68.83%), Postives = 126/154 (81.82%), Query Frame = 2
Query:    5 VETVEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 466
            VE  EWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT KMR  + TVS+ HGDM Q  RD IM EFR G++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  238 VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391          
The following BLAST results are available for this feature:
BLAST of CF834797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_CRYNE9.700e-5972.55ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
FAL1_MAGGR1.267e-5870.13ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
FAL1_BOTFB2.161e-5870.78ATP-dependent RNA helicase fal1 OS=Botryotinia fuc... [more]
RH34_ORYSJ4.814e-5870.13DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH2_ORYSJ4.814e-5870.13DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
FAL1_SCHPO1.829e-5767.53ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
IF4A_CAEEL2.389e-5769.68Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
RH2_ARATH5.323e-5770.13DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A_CRYPV6.952e-5769.48Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A3_NICPL9.079e-5768.83Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06C03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834797 ID=CF834797; Name=CF834797; organism=Citrus sinensis; type=EST; length=662bp
CAATGTTGAGACGGTAGAATGGAAGCTTGAAACACTCTGTGATCTTTATG
AGACTCTGGCCATAACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAAG
GTCGACTGGCTTACGGACAAGATGCGAAGCCGTGACCATACAGTCTCTGC
CACTCATGGGGACATGGATCAGAACACCCGAGATATCATTATGCGTGAAT
TTCGCTCTGGTTCTTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCGT
GGTATTGATGTGCAGCAAGTTTCACTTGTCATAAATTATGATCTGCCGAC
TCAACCAGAAAACTACCTTCACCGTATTGGACGAAGTGGTCGATTTGGAA
GAAAGGGTGTTGCCATTAATTTTGTGACAAGGGATGATGAGAGAATGCTT
TTTGATATTCAAAAGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAAA
CGTTGCTGACCTTCTTTGAGGAGGTTCTGTTTTTGTAAGTTTGTCGAGGC
AAGAAGGGGTTTCCTGATTTTGCAAGTACTGTTTAATGTGGTGGTTCTTT
TCTCCCCTTTTTTTTTTTTTTTGGGTTCTTCTTCCTTTCCGTCTAATGTC
TTAAATTAATGTTGTTCTCAAACATGTCCGACCATTTAATCATATGGGTC
ATGCACATTTGC
back to top